PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G071600.2 | ||||||||
Common Name | B456_008G071600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 347aa MW: 38707.3 Da PI: 10.1524 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62.1 | 8.9e-20 | 66 | 146 | 3 | 86 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 v+ ps+v gr+ +p +fa+++ ++++ ltl +++g++W kl y +kk++++ l +GW+eFv++n+L++gD++vF+l++ Gorai.008G071600.2 66 IVMQPSYVR--GRMFIPSDFARKFLTVHKS--NLTLCNSTGKTWHAKLYYpaNKKPNAH-LYGGWREFVEDNHLNVGDICVFELIK 146 556555554..679**********666444..6***************88988888887.677********************986 PP | |||||||
2 | B3 | 60.6 | 2.6e-19 | 242 | 338 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrse 89 v ps+v++ + + +p +f +++ +k s +++l+ +grsW+v++ r++s++ ++ +k W +F+ +n+L++gD++vF+l+++++ Gorai.008G071600.2 242 SVVIHPSHVGSCSTVHIPEEFGKRYLKK---SGEMMLRVADGRSWNVEYERRGRSKGrkaVFGGKSWGQFAMDNELEVGDVCVFELMNENG 329 566779*******************533...448***************773333334558888**********************98766 PP E..EEEEE- CS B3 90 felvvkvfr 98 l v ++r Gorai.008G071600.2 330 NLLEVVIHR 338 656666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.92E-24 | 58 | 150 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.9E-24 | 58 | 148 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.14E-21 | 62 | 146 | No hit | No description |
PROSITE profile | PS50863 | 13.676 | 62 | 158 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.6E-11 | 64 | 158 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-17 | 64 | 146 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.4E-21 | 234 | 338 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.32E-20 | 236 | 336 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.37E-23 | 239 | 338 | No hit | No description |
PROSITE profile | PS50863 | 14.353 | 241 | 339 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.4E-21 | 241 | 340 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-17 | 242 | 338 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MRIDASNQHE QNSKLEVLSS GTSPDAQRSV KTKAFSCVQR LAAIEKAHAV QIASAFESTE 60 NPVFMIVMQP SYVRGRMFIP SDFARKFLTV HKSNLTLCNS TGKTWHAKLY YPANKKPNAH 120 LYGGWREFVE DNHLNVGDIC VFELIKYPEI LMKTRSSVQH CKMTRTSLSG SIQAKGIKHE 180 KGKSLNFQYS TEELGGGLKN SAKGDSGRKS GARRCLKPDP VYQKRRACTG GGAFRTSNPS 240 FSVVIHPSHV GSCSTVHIPE EFGKRYLKKS GEMMLRVADG RSWNVEYERR GRSKGRKAVF 300 GGKSWGQFAM DNELEVGDVC VFELMNENGN LLEVVIHRKL LLVEIN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 3e-14 | 41 | 154 | 27 | 137 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 3e-14 | 41 | 154 | 27 | 137 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012435369.1 | 1e-133 | PREDICTED: B3 domain-containing protein REM19-like | ||||
Refseq | XP_016720614.1 | 1e-128 | PREDICTED: B3 domain-containing protein Os11g0197600-like | ||||
Refseq | XP_017637007.1 | 1e-127 | PREDICTED: B3 domain-containing protein LOC_Os12g40080-like isoform X2 | ||||
TrEMBL | A0A0D2T1X7 | 0.0 | A0A0D2T1X7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G071600.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 2e-15 | related to vernalization1 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G071600.2 |
Publications ? help Back to Top | |||
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