PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G071600.1
Common NameB456_008G071600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 482aa    MW: 54309.1 Da    PI: 10.0431
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G071600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.24.2e-20101012100
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                         fkv +   +l+ g+l +p+kf++++g++   s  ++le +sg  W+v+l   k+++r+ l++GW+eF++   L+ g fvvF+++g++ f  
  Gorai.008G071600.1  10 FKVIL-QETLRDGILGIPRKFVRKYGNQ--LSSPVKLEVPSGAIWQVEL--AKTDERVRLQNGWREFAEHYSLELGSFVVFRYEGNDHF-- 93 
                         55553.46778899***********988..5567***************..**********************************9999.. PP

                         EEEEE-SS CS
                  B3  93 vvkvfrks 100
                         +v +f+ks
  Gorai.008G071600.1  94 HVLIFDKS 101
                         *****985 PP
2B361.41.5e-19201281386
                         EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          v+ ps+v   gr+ +p +fa+++  ++++   ltl +++g++W  kl y  +kk++++ l +GW+eFv++n+L++gD++vF+l++
  Gorai.008G071600.1 201 IVMQPSYVR--GRMFIPSDFARKFLTVHKS--NLTLCNSTGKTWHAKLYYpaNKKPNAH-LYGGWREFVEDNHLNVGDICVFELIK 281
                         556555554..679**********666444..6***************88988888887.677********************986 PP
3B359.84.6e-19377473298
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           v  ps+v++ + + +p +f +++ +k   s +++l+  +grsW+v++  r++s++   ++ +k W +F+ +n+L++gD++vF+l+++++
  Gorai.008G071600.1 377 SVVIHPSHVGSCSTVHIPEEFGKRYLKK---SGEMMLRVADGRSWNVEYERRGRSKGrkaVFGGKSWGQFAMDNELEVGDVCVFELMNENG 464
                         566779*******************533...448***************773333334558888**********************98766 PP

                         E..EEEEE- CS
                  B3  90 felvvkvfr 98 
                           l v ++r
  Gorai.008G071600.1 465 NLLEVVIHR 473
                         656666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-282101IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.53E-272101IPR015300DNA-binding pseudobarrel domain
CDDcd100175.21E-22799No hitNo description
PROSITE profilePS5086314.8758101IPR003340B3 DNA binding domain
SMARTSM010198.9E-229101IPR003340B3 DNA binding domain
PfamPF023623.2E-1610100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-23193283IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-24193285IPR015300DNA-binding pseudobarrel domain
CDDcd100171.46E-20197281No hitNo description
PROSITE profilePS5086313.676197293IPR003340B3 DNA binding domain
PfamPF023623.1E-17199281IPR003340B3 DNA binding domain
SMARTSM010196.6E-11199293IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-20369473IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-20371471IPR015300DNA-binding pseudobarrel domain
CDDcd100171.72E-22374473No hitNo description
PROSITE profilePS5086314.353376474IPR003340B3 DNA binding domain
SMARTSM010199.4E-21376475IPR003340B3 DNA binding domain
PfamPF023622.3E-17377473IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MFTSKTPHFF KVILQETLRD GILGIPRKFV RKYGNQLSSP VKLEVPSGAI WQVELAKTDE  60
RVRLQNGWRE FAEHYSLELG SFVVFRYEGN DHFHVLIFDK SASETEYPHT STEGNDVSRK  120
SKEKSHLPCP LPQKKMRIDA SNQHEQNSKL EVLSSGTSPD AQRSVKTKAF SCVQRLAAIE  180
KAHAVQIASA FESTENPVFM IVMQPSYVRG RMFIPSDFAR KFLTVHKSNL TLCNSTGKTW  240
HAKLYYPANK KPNAHLYGGW REFVEDNHLN VGDICVFELI KYPEILMKTR SSVQHCKMTR  300
TSLSGSIQAK GIKHEKGKSL NFQYSTEELG GGLKNSAKGD SGRKSGARRC LKPDPVYQKR  360
RACTGGGAFR TSNPSFSVVI HPSHVGSCST VHIPEEFGKR YLKKSGEMML RVADGRSWNV  420
EYERRGRSKG RKAVFGGKSW GQFAMDNELE VGDVCVFELM NENGNLLEVV IHRKLLLVEI  480
N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A6e-1417628927137B3 domain-containing transcription factor VRN1
4i1k_B6e-1417628927137B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012463109.11e-156PREDICTED: B3 domain-containing transcription factor VRN1-like
RefseqXP_012463110.11e-156PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A0D2PQB50.0A0A0D2PQB5_GOSRA; Uncharacterized protein
STRINGGorai.008G071600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1837549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-42B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]