PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G071500.1 | ||||||||
Common Name | B456_008G071500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 337aa MW: 37901.8 Da PI: 7.8479 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40 | 6.8e-13 | 54 | 96 | 48 | 86 |
EEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 48 vkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 ++++y ++k++ +l +GW+eFv++n+L++gD++vF+l++ Gorai.008G071500.1 54 FQHKYysnpKNKDRNAYLYGGWREFVEDNHLNVGDVCVFELIK 96 44444566677777799***********************986 PP | |||||||
2 | B3 | 56.8 | 4.1e-18 | 231 | 323 | 2 | 94 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 v ps+v++ + l +pk+f +++ ++ s +++l+ e+g++W+v++ +k++++ + ++ W +F +n+L++gD++vF+l+++++ Gorai.008G071500.1 231 SVVIHPSYVGSCSALHIPKEFGKRYLKN---SGEMMLRIEDGKTWTVEYERrarNKGRKAEFKSNSWGQFTIDNELEVGDVCVFELINENG 318 566789*******************644...3479**************6666444444477789*********************98554 PP E..EE CS B3 90 felvv 94 l v Gorai.008G071500.1 319 NLLEV 323 43444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.29 | 27 | 112 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.53 | 49 | 112 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.19E-12 | 53 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.0E-10 | 56 | 96 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.34E-10 | 57 | 106 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.3E-10 | 64 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-18 | 223 | 317 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.65E-18 | 225 | 323 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.87E-22 | 229 | 320 | No hit | No description |
SMART | SM01019 | 2.6E-19 | 230 | 329 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.112 | 230 | 328 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-16 | 231 | 324 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MAHLFTNHAL HIRKYVTAAC TIAAACIQAV CTQQNHHNSR HFNKNITATW LAIFQHKYYS 60 NPKNKDRNAY LYGGWREFVE DNHLNVGDVC VFELIKLPEI LMKVVINLLV ENTSKACDSL 120 AFGSIDSRVN TRSLVSDAEP TCQQSLCPSS SGESKDLTDS YIETLDDSPL DQETKKLTPR 180 SIQPCELKYS AEDDSGRTSG AQRCLKPDPV YQKQRACIGG GAFRTSNSSF SVVIHPSYVG 240 SCSALHIPKE FGKRYLKNSG EMMLRIEDGK TWTVEYERRA RNKGRKAEFK SNSWGQFTID 300 NELEVGDVCV FELINENGNL LEVAFRKLYS SKLINY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016720614.1 | 1e-135 | PREDICTED: B3 domain-containing protein Os11g0197600-like | ||||
TrEMBL | A0A0D2TYV0 | 0.0 | A0A0D2TYV0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G071500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18375 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 8e-18 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G071500.1 |
Publications ? help Back to Top | |||
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