PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G071500.1
Common NameB456_008G071500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 337aa    MW: 37901.8 Da    PI: 7.8479
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G071500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3406.8e-1354964886
                        EEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3 48 vkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldg 86
                        ++++y    ++k++  +l +GW+eFv++n+L++gD++vF+l++
  Gorai.008G071500.1 54 FQHKYysnpKNKDRNAYLYGGWREFVEDNHLNVGDVCVFELIK 96
                        44444566677777799***********************986 PP

2B356.84.1e-18231323294
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           v  ps+v++ + l +pk+f +++ ++   s +++l+ e+g++W+v++     +k++++ + ++ W +F  +n+L++gD++vF+l+++++
  Gorai.008G071500.1 231 SVVIHPSYVGSCSALHIPKEFGKRYLKN---SGEMMLRIEDGKTWTVEYERrarNKGRKAEFKSNSWGQFTIDNELEVGDVCVFELINENG 318
                         566789*******************644...3479**************6666444444477789*********************98554 PP

                         E..EE CS
                  B3  90 felvv 94 
                           l v
  Gorai.008G071500.1 319 NLLEV 323
                         43444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.2927112IPR003340B3 DNA binding domain
PROSITE profilePS508639.5349112IPR003340B3 DNA binding domain
SuperFamilySSF1019364.19E-1253105IPR015300DNA-binding pseudobarrel domain
PfamPF023623.0E-105696IPR003340B3 DNA binding domain
CDDcd100173.34E-1057106No hitNo description
Gene3DG3DSA:2.40.330.102.3E-106497IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-18223317IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.65E-18225323IPR015300DNA-binding pseudobarrel domain
CDDcd100174.87E-22229320No hitNo description
SMARTSM010192.6E-19230329IPR003340B3 DNA binding domain
PROSITE profilePS5086313.112230328IPR003340B3 DNA binding domain
PfamPF023622.8E-16231324IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MAHLFTNHAL HIRKYVTAAC TIAAACIQAV CTQQNHHNSR HFNKNITATW LAIFQHKYYS  60
NPKNKDRNAY LYGGWREFVE DNHLNVGDVC VFELIKLPEI LMKVVINLLV ENTSKACDSL  120
AFGSIDSRVN TRSLVSDAEP TCQQSLCPSS SGESKDLTDS YIETLDDSPL DQETKKLTPR  180
SIQPCELKYS AEDDSGRTSG AQRCLKPDPV YQKQRACIGG GAFRTSNSSF SVVIHPSYVG  240
SCSALHIPKE FGKRYLKNSG EMMLRIEDGK TWTVEYERRA RNKGRKAEFK SNSWGQFTID  300
NELEVGDVCV FELINENGNL LEVAFRKLYS SKLINY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016720614.11e-135PREDICTED: B3 domain-containing protein Os11g0197600-like
TrEMBLA0A0D2TYV00.0A0A0D2TYV0_GOSRA; Uncharacterized protein
STRINGGorai.008G071500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1837549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.18e-18B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]