PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G071400.1 | ||||||||
Common Name | B456_008G071400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 271aa MW: 30210.7 Da PI: 10.4735 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.7 | 1e-18 | 166 | 263 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 v ps+ ++s+ l +p +f++++ +k s +++l+ +gr W v+++ +k++++ + ++ W +F+k+n+L++gD+++F+l+++++ Gorai.008G071400.1 166 SVVIQPSYIGSSSALHIPVEFVKRYLKK---SGEMVLRVADGRIWVVEYRRtasNKGRKAKFGSRSWGQFAKDNQLEVGDVCLFELMNENG 253 5677899******************533...448***************888866666668899**********************99877 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 l v ++rk Gorai.008G071400.1 254 NLLEVAIHRK 263 7788888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.8E-21 | 156 | 263 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.22E-21 | 160 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.22E-23 | 163 | 262 | No hit | No description |
Pfam | PF02362 | 7.6E-17 | 165 | 263 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-20 | 165 | 264 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.156 | 165 | 264 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MKVQTYPVVK NASKACGTQA LGSIVSRVKT RSLVSDAKRS CQQSARLPSC REFIDLTDSY 60 IESLDDSPLD QKTKKKMTSP SFQPCKLRTN PSESNQAKGI KLEKEKKSLN FQYLTKEVGG 120 ELKCSVKNDS GRRSSARRRP KPDPVYGKQR ACVGASAFRT SNPSFSVVIQ PSYIGSSSAL 180 HIPVEFVKRY LKKSGEMVLR VADGRIWVVE YRRTASNKGR KAKFGSRSWG QFAKDNQLEV 240 GDVCLFELMN ENGNLLEVAI HRKHLLIEID * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016730859.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A0D2SWF9 | 0.0 | A0A0D2SWF9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G071400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18375 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 4e-15 | related to vernalization1 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G071400.1 |
Publications ? help Back to Top | |||
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