PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G071400.1
Common NameB456_008G071400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 271aa    MW: 30210.7 Da    PI: 10.4735
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G071400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.71e-18166263299
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           v  ps+ ++s+ l +p +f++++ +k   s +++l+  +gr W v+++    +k++++ + ++ W +F+k+n+L++gD+++F+l+++++
  Gorai.008G071400.1 166 SVVIQPSYIGSSSALHIPVEFVKRYLKK---SGEMVLRVADGRIWVVEYRRtasNKGRKAKFGSRSWGQFAKDNQLEVGDVCLFELMNENG 253
                         5677899******************533...448***************888866666668899**********************99877 PP

                         E..EEEEE-S CS
                  B3  90 felvvkvfrk 99 
                           l v ++rk
  Gorai.008G071400.1 254 NLLEVAIHRK 263
                         7788888776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.8E-21156263IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-21160258IPR015300DNA-binding pseudobarrel domain
CDDcd100171.22E-23163262No hitNo description
PfamPF023627.6E-17165263IPR003340B3 DNA binding domain
SMARTSM010191.6E-20165264IPR003340B3 DNA binding domain
PROSITE profilePS5086314.156165264IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MKVQTYPVVK NASKACGTQA LGSIVSRVKT RSLVSDAKRS CQQSARLPSC REFIDLTDSY  60
IESLDDSPLD QKTKKKMTSP SFQPCKLRTN PSESNQAKGI KLEKEKKSLN FQYLTKEVGG  120
ELKCSVKNDS GRRSSARRRP KPDPVYGKQR ACVGASAFRT SNPSFSVVIQ PSYIGSSSAL  180
HIPVEFVKRY LKKSGEMVLR VADGRIWVVE YRRTASNKGR KAKFGSRSWG QFAKDNQLEV  240
GDVCLFELMN ENGNLLEVAI HRKHLLIEID *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016730859.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A0D2SWF90.0A0A0D2SWF9_GOSRA; Uncharacterized protein
STRINGGorai.008G071400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1837549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.14e-15related to vernalization1 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]