PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G071300.2 | ||||||||
Common Name | B456_008G071300, LOC105763318 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 722aa MW: 81555.5 Da PI: 8.6467 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.9 | 6.8e-17 | 16 | 99 | 9 | 98 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + + + l +p+kf++++g+ s + l+ +sg +W +l +k++g +++++GW+ F++ L+ g f+vF+++g+ +f +v +f+ Gorai.008G071300.2 16 ATIRDKKLGIPRKFVRKYGK--GLSSSVLLTVPSGDTWHAQL--TKSDGVVWFQNGWQAFAEYYSLQYGHFLVFRYEGNGKF--LVLIFD 99 34455669**********84..47778***************..********************************998777..999997 PP | |||||||
2 | B3 | 55.5 | 1e-17 | 224 | 322 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl.iy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+ ++ ps+ + + +++pk+f+ ++ k++ + +ltl +++g++W+ ++ +y r+k + ++ GW++F +n+L++gD++vF+l++++ Gorai.008G071300.2 224 FLVIMQPSYINPGRKMCIPKEFTMKFL-KENLG-DLTLCTSEGKTWSTQYwRYisRNKYTKAIIHIGWRQFMLDNNLEAGDVCVFELISQT 312 667788888888899********8884.44454.9***************433777777779999***********************987 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 e l+v ++r Gorai.008G071300.2 313 ESMLKVIIYR 322 7767777766 PP | |||||||
3 | B3 | 56.4 | 5.4e-18 | 386 | 484 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+ v+ p + ++ l +p kf+++h + e+ + +l+ ++gr+W vk+++ ++++ + + W+ F+++n+L++gD++vF+l++r+ Gorai.008G071300.2 386 FKVVMQPRYLILRCSLGIPYKFVNRHLDE--EKEEAILRVSDGRTWVVKFTVkvfTGGQHKA-EFSTWRAFARDNNLEVGDVCVFELINRH 473 4455667777788*************433..23479**************776543333333.3369*********************998 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 e +++v++f++ Gorai.008G071300.2 474 ENSFKVSIFSA 484 8889***9985 PP | |||||||
4 | B3 | 51.9 | 1.4e-16 | 615 | 706 | 1 | 91 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgr..yvltkGWkeFvkangLkegDfvvFkld 85 f ++ ps+v++ rl +p +f +++ + ++ + + +g++W k+ +++ l +GWk F+k+n+L+ gD++vF+++ Gorai.008G071300.2 615 FTVAMQPSYVSNGYRLAIPLDFSRKYlrN---GSGNAILSMVGDGKTWLTKYHReaKGT--NprAKLIDGWKTFAKDNNLEIGDVCVFEMI 700 677899********************642...34445666678*********5544333..24588999********************98 PP SSSEE. CS B3 86 grsefe 91 ++++ + Gorai.008G071300.2 701 NSEGYQ 706 655443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.7E-26 | 2 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.73E-24 | 3 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.55E-20 | 7 | 99 | No hit | No description |
PROSITE profile | PS50863 | 13.916 | 8 | 101 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-17 | 9 | 101 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.8E-14 | 17 | 99 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-22 | 215 | 322 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.24E-20 | 217 | 322 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.45E-22 | 222 | 322 | No hit | No description |
PROSITE profile | PS50863 | 14.254 | 224 | 324 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.1E-16 | 224 | 322 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.7E-11 | 224 | 324 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.6E-21 | 377 | 483 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.69E-21 | 379 | 483 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.94E-23 | 384 | 483 | No hit | No description |
Pfam | PF02362 | 9.8E-16 | 386 | 484 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.888 | 386 | 485 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-14 | 386 | 485 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-21 | 608 | 716 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-21 | 609 | 705 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.00E-21 | 613 | 715 | No hit | No description |
Pfam | PF02362 | 4.1E-15 | 615 | 704 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.579 | 615 | 717 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.3E-14 | 615 | 717 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 722 aa Download sequence Send to blast |
MFASKTPHFF KIILEATIRD KKLGIPRKFV RKYGKGLSSS VLLTVPSGDT WHAQLTKSDG 60 VVWFQNGWQA FAEYYSLQYG HFLVFRYEGN GKFLVLIFDM SASEIEYPCK SHIEDHNSDD 120 QVCLKLVNKE AKDDTCDGTL YETPPCKETR KKKKKKRSRP PCSKPRKKLK TTQKDKNEKD 180 WEDESTSEDD MQTKVPRDEH AFGVIEYDKA LQRASSFRSE NPFFLVIMQP SYINPGRKMC 240 IPKEFTMKFL KENLGDLTLC TSEGKTWSTQ YWRYISRNKY TKAIIHIGWR QFMLDNNLEA 300 GDVCVFELIS QTESMLKVII YRVRQDTSCS SPLGGINSSE NGGNVNSSTL GSTESNHDCL 360 MRPMTPVEKA RAILKASNFK SKNPFFKVVM QPRYLILRCS LGIPYKFVNR HLDEEKEEAI 420 LRVSDGRTWV VKFTVKVFTG GQHKAEFSTW RAFARDNNLE VGDVCVFELI NRHENSFKVS 480 IFSAAPGANS SLSPQADDAE ASQVASKNCL VPRIEADDDF GNCYAGNSTD DAIASQVASK 540 DWLVPKIEAD DDFGKCHVGN SSSAAQFPAI GYQETEEEVQ PTISTRPRGP QRLQAGEKAK 600 ALQRASGFKS QNPFFTVAMQ PSYVSNGYRL AIPLDFSRKY LRNGSGNAIL SMVGDGKTWL 660 TKYHREAKGT NPRAKLIDGW KTFAKDNNLE IGDVCVFEMI NSEGYQLSLN VAIYKPQEDQ 720 T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 6e-17 | 206 | 709 | 25 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 6e-17 | 206 | 709 | 25 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 150 | 156 | KKKKKKR |
2 | 152 | 167 | KKKKRSRPPCSKPRKK |
3 | 153 | 168 | KKKRSRPPCSKPRKKL |
4 | 154 | 167 | KKRSRPPCSKPRKK |
5 | 164 | 170 | PRKKLKT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX616762 | 1e-147 | JX616762.1 Gossypium hirsutum clone NBRI_GE61640 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012436969.1 | 0.0 | PREDICTED: B3 domain-containing protein Os03g0620400-like | ||||
TrEMBL | A0A0D2SWH2 | 0.0 | A0A0D2SWH2_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G071300.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-48 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G071300.2 |
Entrez Gene | 105763318 |
Publications ? help Back to Top | |||
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