PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G071200.3

Common Name

B456_008G071200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 720aa MW: 81044.5 Da PI: 6.9039

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G071200.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.8	6.4e-16	17	100	10	99
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + + + l +p kf++++g+ s + l+ +sg +W v+l +k++g ++l++GW+eF + Lk g +vFk++g+ +f +v +f++ Gorai.008G071200.3 17 NIRDKKLEIPGKFVRKYGNG--LSNSVLLTVPSGDTWHVEL--TKSDGIVWLQNGWQEFSEYFSLKYGHLLVFKYEGNGKF--LVLIFDT 100 3445669********855..7788***********..****************************998777..**997 PP
2	B3	52.3	1e-16	332	429	1	97
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+ ++ ps+ + + +++pk+f+ ++ +ltl +++gr+W+ ++ r+k + ++ GW++F +n+L++gD++vF+l+++ Gorai.008G071200.3 332 FLVTMQPSYINPGRKMCIPKNFTMKFlT-R--DLGDLTLCTSDGRTWSAQYLCymtRNKYTKATIHIGWRQFMLDNNLEAGDVCVFELISQ 419 667788888888899******88842.2..2338***********4448877778899**********************987 PP SEE..EEEEE CS B3 88 sefelvvkvf 97 +e l+v ++ Gorai.008G071200.3 420 TEIMLKVIIY 429 6666666655 PP
3	B3	59.1	8e-19	494	592	2	98
EEE-...-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 2 fkvlt.psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 fkv + p + + ++ l++p kf++++ + e+ + +l+ ++gr+W vk+ + ++++ + ++ W+ F+++n+L++gD++vF+l++r+ Gorai.008G071200.3 494 FKVVMqPRYLTIRCSLSIPYKFVNQYLDE--EKEEAILQVSDGRTWVVKFAVkvvTGGQHKAEFSHTWRAFARDNNLEVGDVCVFELINRN 582 5555505555566********999433..23479**********77766666666889999*****************998 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 e +++v++f+ Gorai.008G071200.3 583 ENSFKVSIFS 592 8889*997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.35E-24	2	101	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.3E-24	2	101	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.60E-20	7	99	No hit	No description
PROSITE profile	PS50863	14.156	8	101	IPR003340	B3 DNA binding domain
SMART	SM01019	3.0E-15	9	101	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.2E-13	17	100	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	6.8E-21	324	429	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.16E-20	325	430	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.67E-20	330	430	No hit	No description
Pfam	PF02362	3.1E-15	332	430	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.38	332	432	IPR003340	B3 DNA binding domain
SMART	SM01019	1.1E-10	332	432	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	4.2E-23	485	592	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.12E-21	487	592	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.81E-23	492	592	No hit	No description
Pfam	PF02362	7.7E-17	493	593	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.522	494	594	IPR003340	B3 DNA binding domain
SMART	SM01019	2.9E-12	494	594	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 720 aa Download sequence Send to blast
MFTPKTPHFF KIILDANIRD KKLEIPGKFV RKYGNGLSNS VLLTVPSGDT WHVELTKSDG 60 IVWLQNGWQE FSEYFSLKYG HLLVFKYEGN GKFLVLIFDT SASEIEYPCK SHIEDQESDD 120 QMCLKPVKEE PKDDVCDKPL HGTPSCKETK RKKSRSLCSN AEYLCKSYID DHKSDDQLCL 180 KPVKEEAKDG VYDETLYETP PCKKARRTKS QSQCSKIEYP CKSHIEDHKS EDQVSLKPVK 240 EEAKDDVCDK TLYETPPCKE TRKKKPQSQC SKPRKKLKTA QKDKNRKDCE DASTDEEGLQ 300 TKVPRDGRAF GAIEYDKALQ RAFSFESENP FFLVTMQPSY INPGRKMCIP KNFTMKFLTR 360 DLGDLTLCTS DGRTWSAQYL CYMTRNKYTK ATIHIGWRQF MLDNNLEAGD VCVFELISQT 420 EIMLKVIIYR VRQDASCSSP LGGINSLENG DNVSSSTPGS TESKHHCSIR SLTPHEKARA 480 IQKASNFKSK NPFFKVVMQP RYLTIRCSLS IPYKFVNQYL DEEKEEAILQ VSDGRTWVVK 540 FAVKVVTGGQ HKAEFSHTWR AFARDNNLEV GDVCVFELIN RNENSFKVSI FSEAPGANSS 600 LSPQAHDVKA SQVASKNCSV PKIEADDDFG NCYAGNPGPA AQPTTIGHQE NEEEVNPTDD 660 AIASQVASKD FLVPKVEVDD DFGKCYAGNF SPAAQITTTG YQEAEEEVKP TISTGPRGP*

Sequence ? help Back to Top

Protein Sequence Length: 720 aa Download sequence Send to blast

MFTPKTPHFF KIILDANIRD KKLEIPGKFV RKYGNGLSNS VLLTVPSGDT WHVELTKSDG  60
IVWLQNGWQE FSEYFSLKYG HLLVFKYEGN GKFLVLIFDT SASEIEYPCK SHIEDQESDD  120
QMCLKPVKEE PKDDVCDKPL HGTPSCKETK RKKSRSLCSN AEYLCKSYID DHKSDDQLCL  180
KPVKEEAKDG VYDETLYETP PCKKARRTKS QSQCSKIEYP CKSHIEDHKS EDQVSLKPVK  240
EEAKDDVCDK TLYETPPCKE TRKKKPQSQC SKPRKKLKTA QKDKNRKDCE DASTDEEGLQ  300
TKVPRDGRAF GAIEYDKALQ RAFSFESENP FFLVTMQPSY INPGRKMCIP KNFTMKFLTR  360
DLGDLTLCTS DGRTWSAQYL CYMTRNKYTK ATIHIGWRQF MLDNNLEAGD VCVFELISQT  420
EIMLKVIIYR VRQDASCSSP LGGINSLENG DNVSSSTPGS TESKHHCSIR SLTPHEKARA  480
IQKASNFKSK NPFFKVVMQP RYLTIRCSLS IPYKFVNQYL DEEKEEAILQ VSDGRTWVVK  540
FAVKVVTGGQ HKAEFSHTWR AFARDNNLEV GDVCVFELIN RNENSFKVSI FSEAPGANSS  600
LSPQAHDVKA SQVASKNCSV PKIEADDDFG NCYAGNPGPA AQPTTIGHQE NEEEVNPTDD  660
AIASQVASKD FLVPKVEVDD DFGKCYAGNF SPAAQITTTG YQEAEEEVKP TISTGPRGP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4i1k_A	3e-18	308	591	25	144	B3 domain-containing transcription factor VRN1
4i1k_B	3e-18	308	591	25	144	B3 domain-containing transcription factor VRN1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	272	278	PRKKLKT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX616762	2e-58	JX616762.1 Gossypium hirsutum clone NBRI_GE61640 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012436967.1	0.0	PREDICTED: uncharacterized protein LOC105763317 isoform X1
TrEMBL	A0A0D2T1X1	0.0	A0A0D2T1X1_GOSRA; Uncharacterized protein
STRING	Gorai.008G071200.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	4e-29	B3 family protein

Link Out ? help Back to Top
Phytozome	Gorai.008G071200.3

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]