PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.008G071200.2 | ||||||||
Common Name | B456_008G071200, LOC105763317 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 731aa MW: 82287.9 Da PI: 7.0151 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.7 | 6.5e-16 | 28 | 111 | 10 | 99 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + + + l +p kf++++g+ s + l+ +sg +W v+l +k++g ++l++GW+eF + Lk g +vFk++g+ +f +v +f++ Gorai.008G071200.2 28 NIRDKKLEIPGKFVRKYGNG--LSNSVLLTVPSGDTWHVEL--TKSDGIVWLQNGWQEFSEYFSLKYGHLLVFKYEGNGKF--LVLIFDT 111 3445669**********855..7788***************..********************************998777..****997 PP | |||||||
2 | B3 | 52.3 | 1e-16 | 343 | 440 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+ ++ ps+ + + +++pk+f+ ++ +ltl +++gr+W+ ++ r+k + ++ GW++F +n+L++gD++vF+l+++ Gorai.008G071200.2 343 FLVTMQPSYINPGRKMCIPKNFTMKFlT-R--DLGDLTLCTSDGRTWSAQYLCymtRNKYTKATIHIGWRQFMLDNNLEAGDVCVFELISQ 430 667788888888899********88842.2..2338***************4448877778899************************987 PP SEE..EEEEE CS B3 88 sefelvvkvf 97 +e l+v ++ Gorai.008G071200.2 431 TEIMLKVIIY 440 6666666655 PP | |||||||
3 | B3 | 59 | 8.2e-19 | 505 | 603 | 2 | 98 |
EEE-...-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 2 fkvlt.psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 fkv + p + + ++ l++p kf++++ + e+ + +l+ ++gr+W vk+ + ++++ + ++ W+ F+++n+L++gD++vF+l++r+ Gorai.008G071200.2 505 FKVVMqPRYLTIRCSLSIPYKFVNQYLDE--EKEEAILQVSDGRTWVVKFAVkvvTGGQHKAEFSHTWRAFARDNNLEVGDVCVFELINRN 593 5555505555566**********999433..23479**************77766666666889999*********************998 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 e +++v++f+ Gorai.008G071200.2 594 ENSFKVSIFS 603 8889***997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.8E-25 | 11 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-24 | 13 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.76E-20 | 18 | 110 | No hit | No description |
PROSITE profile | PS50863 | 14.156 | 19 | 112 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.0E-15 | 20 | 112 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.3E-13 | 28 | 111 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.0E-21 | 335 | 440 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.18E-20 | 336 | 441 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.91E-20 | 341 | 441 | No hit | No description |
Pfam | PF02362 | 3.1E-15 | 343 | 441 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-10 | 343 | 443 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.38 | 343 | 443 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.3E-23 | 496 | 603 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.14E-21 | 498 | 603 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.86E-23 | 503 | 603 | No hit | No description |
Pfam | PF02362 | 7.9E-17 | 504 | 604 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.9E-12 | 505 | 605 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.522 | 505 | 605 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 731 aa Download sequence Send to blast |
MPKSLKENNN SMFTPKTPHF FKIILDANIR DKKLEIPGKF VRKYGNGLSN SVLLTVPSGD 60 TWHVELTKSD GIVWLQNGWQ EFSEYFSLKY GHLLVFKYEG NGKFLVLIFD TSASEIEYPC 120 KSHIEDQESD DQMCLKPVKE EPKDDVCDKP LHGTPSCKET KRKKSRSLCS NAEYLCKSYI 180 DDHKSDDQLC LKPVKEEAKD GVYDETLYET PPCKKARRTK SQSQCSKIEY PCKSHIEDHK 240 SEDQVSLKPV KEEAKDDVCD KTLYETPPCK ETRKKKPQSQ CSKPRKKLKT AQKDKNRKDC 300 EDASTDEEGL QTKVPRDGRA FGAIEYDKAL QRAFSFESEN PFFLVTMQPS YINPGRKMCI 360 PKNFTMKFLT RDLGDLTLCT SDGRTWSAQY LCYMTRNKYT KATIHIGWRQ FMLDNNLEAG 420 DVCVFELISQ TEIMLKVIIY RVRQDASCSS PLGGINSLEN GDNVSSSTPG STESKHHCSI 480 RSLTPHEKAR AIQKASNFKS KNPFFKVVMQ PRYLTIRCSL SIPYKFVNQY LDEEKEEAIL 540 QVSDGRTWVV KFAVKVVTGG QHKAEFSHTW RAFARDNNLE VGDVCVFELI NRNENSFKVS 600 IFSEAPGANS SLSPQAHDVK ASQVASKNCS VPKIEADDDF GNCYAGNPGP AAQPTTIGHQ 660 ENEEEVNPTD DAIASQVASK DFLVPKVEVD DDFGKCYAGN FSPAAQITTT GYQEAEEEVK 720 PTISTGPRGP * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 3e-18 | 319 | 602 | 25 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 3e-18 | 319 | 602 | 25 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 283 | 289 | PRKKLKT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JX616762 | 2e-58 | JX616762.1 Gossypium hirsutum clone NBRI_GE61640 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012436967.1 | 0.0 | PREDICTED: uncharacterized protein LOC105763317 isoform X1 | ||||
TrEMBL | A0A0D2SWG4 | 0.0 | A0A0D2SWG4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G071200.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18990.1 | 4e-29 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.008G071200.2 |
Entrez Gene | 105763317 |
Publications ? help Back to Top | |||
---|---|---|---|
|