PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G071200.1 | ||||||||
Common Name | B456_008G071200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 733aa MW: 82543.2 Da PI: 7.1328 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.7 | 6.6e-16 | 30 | 113 | 10 | 99 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + + + l +p kf++++g+ s + l+ +sg +W v+l +k++g ++l++GW+eF + Lk g +vFk++g+ +f +v +f++ Gorai.008G071200.1 30 NIRDKKLEIPGKFVRKYGNG--LSNSVLLTVPSGDTWHVEL--TKSDGIVWLQNGWQEFSEYFSLKYGHLLVFKYEGNGKF--LVLIFDT 113 3445669**********855..7788***************..********************************998777..****997 PP | |||||||
2 | B3 | 52.3 | 1e-16 | 345 | 442 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+ ++ ps+ + + +++pk+f+ ++ +ltl +++gr+W+ ++ r+k + ++ GW++F +n+L++gD++vF+l+++ Gorai.008G071200.1 345 FLVTMQPSYINPGRKMCIPKNFTMKFlT-R--DLGDLTLCTSDGRTWSAQYLCymtRNKYTKATIHIGWRQFMLDNNLEAGDVCVFELISQ 432 667788888888899********88842.2..2338***************4448877778899************************987 PP SEE..EEEEE CS B3 88 sefelvvkvf 97 +e l+v ++ Gorai.008G071200.1 433 TEIMLKVIIY 442 6666666655 PP | |||||||
3 | B3 | 59 | 8.2e-19 | 507 | 605 | 2 | 98 |
EEE-...-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 2 fkvlt.psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 fkv + p + + ++ l++p kf++++ + e+ + +l+ ++gr+W vk+ + ++++ + ++ W+ F+++n+L++gD++vF+l++r+ Gorai.008G071200.1 507 FKVVMqPRYLTIRCSLSIPYKFVNQYLDE--EKEEAILQVSDGRTWVVKFAVkvvTGGQHKAEFSHTWRAFARDNNLEVGDVCVFELINRN 595 5555505555566**********999433..23479**************77766666666889999*********************998 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 e +++v++f+ Gorai.008G071200.1 596 ENSFKVSIFS 605 8889***997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.8E-25 | 13 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-24 | 15 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.27E-20 | 20 | 112 | No hit | No description |
PROSITE profile | PS50863 | 14.156 | 21 | 114 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.0E-15 | 22 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.3E-13 | 30 | 113 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.0E-21 | 337 | 442 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.18E-20 | 338 | 443 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.19E-20 | 343 | 443 | No hit | No description |
SMART | SM01019 | 1.1E-10 | 345 | 445 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.38 | 345 | 445 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.1E-15 | 345 | 443 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.3E-23 | 498 | 605 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.14E-21 | 500 | 605 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.02E-23 | 505 | 605 | No hit | No description |
Pfam | PF02362 | 7.9E-17 | 506 | 606 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.9E-12 | 507 | 607 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.522 | 507 | 607 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 733 aa Download sequence Send to blast |
MPKSLVRKEN NNSMFTPKTP HFFKIILDAN IRDKKLEIPG KFVRKYGNGL SNSVLLTVPS 60 GDTWHVELTK SDGIVWLQNG WQEFSEYFSL KYGHLLVFKY EGNGKFLVLI FDTSASEIEY 120 PCKSHIEDQE SDDQMCLKPV KEEPKDDVCD KPLHGTPSCK ETKRKKSRSL CSNAEYLCKS 180 YIDDHKSDDQ LCLKPVKEEA KDGVYDETLY ETPPCKKARR TKSQSQCSKI EYPCKSHIED 240 HKSEDQVSLK PVKEEAKDDV CDKTLYETPP CKETRKKKPQ SQCSKPRKKL KTAQKDKNRK 300 DCEDASTDEE GLQTKVPRDG RAFGAIEYDK ALQRAFSFES ENPFFLVTMQ PSYINPGRKM 360 CIPKNFTMKF LTRDLGDLTL CTSDGRTWSA QYLCYMTRNK YTKATIHIGW RQFMLDNNLE 420 AGDVCVFELI SQTEIMLKVI IYRVRQDASC SSPLGGINSL ENGDNVSSST PGSTESKHHC 480 SIRSLTPHEK ARAIQKASNF KSKNPFFKVV MQPRYLTIRC SLSIPYKFVN QYLDEEKEEA 540 ILQVSDGRTW VVKFAVKVVT GGQHKAEFSH TWRAFARDNN LEVGDVCVFE LINRNENSFK 600 VSIFSEAPGA NSSLSPQAHD VKASQVASKN CSVPKIEADD DFGNCYAGNP GPAAQPTTIG 660 HQENEEEVNP TDDAIASQVA SKDFLVPKVE VDDDFGKCYA GNFSPAAQIT TTGYQEAEEE 720 VKPTISTGPR GP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 3e-18 | 321 | 604 | 25 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 3e-18 | 321 | 604 | 25 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 285 | 291 | PRKKLKT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX616762 | 2e-58 | JX616762.1 Gossypium hirsutum clone NBRI_GE61640 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012436967.1 | 0.0 | PREDICTED: uncharacterized protein LOC105763317 isoform X1 | ||||
TrEMBL | A0A0D2T1X1 | 0.0 | A0A0D2T1X1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G071200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16925 | 5 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 4e-29 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G071200.1 |
Publications ? help Back to Top | |||
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