PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G068900.6

Common Name

B456_008G068900, LOC105763291

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 345aa MW: 36153.8 Da PI: 5.2958

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G068900.6	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	77.6	1.6e-24	245	307	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ kv++L +eN++L++el++l++e++kl+se+ Gorai.008G068900.6 245 ERELKRQKRKQSNRESARRSRLRKQAECEELQAKVESLANENHTLRDELKKLSDECEKLTSEN 307 89***********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07777	7.3E-30	1	93	IPR012900	G-box binding protein, multifunctional mosaic region
Gene3D	G3DSA:1.20.5.170	1.2E-20	240	305	No hit	No description
Pfam	PF00170	4.9E-22	245	307	IPR004827	Basic-leucine zipper domain
SMART	SM00338	7.1E-22	245	309	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	13.346	247	310	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.63E-12	248	304	No hit	No description
CDD	cd14702	5.42E-24	250	300	No hit	No description
PROSITE pattern	PS00036	0	252	267	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MGTEEESTPA KPSKPTASTQ EMPTTVSYPD WSTQMQAYYG AAATPPLFAS TVASPTPHPY 60 IWGGQHPLMP PYGTPVPYPA VYPPRGVYAH PNMAPMPSSA RNNGADGKDR GATKKPKGSS 120 GSKVGESAKA TSGSGNDGGS QSGESGSEGT SDRSDESNQQ EVNAGKKGSF EQMLADANAQ 180 GKAAGALVPA EPIVSMPATT LNIGMDLWSA SPAATGAPKT RPNASGTVAT VPAGAVMPDQ 240 WIQDERELKR QKRKQSNRES ARRSRLRKQA ECEELQAKVE SLANENHTLR DELKKLSDEC 300 EKLTSENSSI KDELMRICGP EAISNLEQGN PSPVGEAGGD EGNG*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MGTEEESTPA KPSKPTASTQ EMPTTVSYPD WSTQMQAYYG AAATPPLFAS TVASPTPHPY  60
IWGGQHPLMP PYGTPVPYPA VYPPRGVYAH PNMAPMPSSA RNNGADGKDR GATKKPKGSS  120
GSKVGESAKA TSGSGNDGGS QSGESGSEGT SDRSDESNQQ EVNAGKKGSF EQMLADANAQ  180
GKAAGALVPA EPIVSMPATT LNIGMDLWSA SPAATGAPKT RPNASGTVAT VPAGAVMPDQ  240
WIQDERELKR QKRKQSNRES ARRSRLRKQA ECEELQAKVE SLANENHTLR DELKKLSDEC  300
EKLTSENSSI KDELMRICGP EAISNLEQGN PSPVGEAGGD EGNG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	261	267	RRSRLRK
2	261	268	RRSRLRKQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Found in both light and dark grown leaves.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269\|PubMed:1373374, ECO:0000269\|PubMed:22718771}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012436919.1	0.0	PREDICTED: G-box-binding factor 1-like isoform X1
Swissprot	P42774	1e-112	GBF1_ARATH; G-box-binding factor 1
TrEMBL	A0A0D2SWA2	0.0	A0A0D2SWA2_GOSRA; Uncharacterized protein
STRING	Gorai.008G068900.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36730.1	1e-93	G-box binding factor 1

Link Out ? help Back to Top
Phytozome	Gorai.008G068900.6
Entrez Gene	105763291

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development. Mol Plant, 2013. 6(6): p. 1758-68 [PMID:24157607] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Karumuri S,Bandopadhyay R In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana. Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9 [PMID:25630103] Smykowski A,Zimmermann P,Zentgraf U CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis. Plant Physiol., 2016. 170(2): p. 1164-7 [PMID:26826725] Smykowski A,Fischer SM,Zentgraf U Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1. Plants (Basel), 2015. 4(3): p. 691-709 [PMID:27135347] Giri MK, et al. GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana. Plant J., 2017. 91(5): p. 802-815 [PMID:28622438]