PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G068900.3

Common Name

B456_008G068900, LOC105763291

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 324aa MW: 33965.5 Da PI: 5.7914

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G068900.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	77.7	1.4e-24	224	286	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ kv++L +eN++L++el++l++e++kl+se+ Gorai.008G068900.3 224 ERELKRQKRKQSNRESARRSRLRKQAECEELQAKVESLANENHTLRDELKKLSDECEKLTSEN 286 89***********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07777	1.3E-24	3	72	IPR012900	G-box binding protein, multifunctional mosaic region
Gene3D	G3DSA:1.20.5.170	1.1E-20	219	284	No hit	No description
Pfam	PF00170	4.4E-22	224	286	IPR004827	Basic-leucine zipper domain
SMART	SM00338	7.1E-22	224	288	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	13.346	226	289	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.81E-12	227	283	No hit	No description
CDD	cd14702	4.72E-24	229	279	No hit	No description
PROSITE pattern	PS00036	0	231	246	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MPTTVSYPDW STQMQAYYGA AATPPLFAST VASPTPHPYI WGGQHPLMPP YGTPVPYPAV 60 YPPRGVYAHP NMAPMPSSAR NNGADGKDRG ATKKPKGSSG SKVGESAKAT SGSGNDGGSQ 120 SGESGSEGTS DRSDESNQQE VNAGKKGSFE QMLADANAQG KAAGALVPAE PIVSMPATTL 180 NIGMDLWSAS PAATGAPKTR PNASGTVATV PAGAVMPDQW IQDERELKRQ KRKQSNRESA 240 RRSRLRKQAE CEELQAKVES LANENHTLRD ELKKLSDECE KLTSENSSIK DELMRICGPE 300 AISNLEQGNP SPVGEAGGDE GNG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	240	246	RRSRLRK
2	240	247	RRSRLRKQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Found in both light and dark grown leaves.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269\|PubMed:1373374, ECO:0000269\|PubMed:22718771}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012436919.1	0.0	PREDICTED: G-box-binding factor 1-like isoform X1
Swissprot	P42774	1e-104	GBF1_ARATH; G-box-binding factor 1
TrEMBL	A0A0D2SWA2	0.0	A0A0D2SWA2_GOSRA; Uncharacterized protein
STRING	Gorai.008G068900.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36730.1	6e-86	G-box binding factor 1

Link Out ? help Back to Top
Phytozome	Gorai.008G068900.3
Entrez Gene	105763291

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development. Mol Plant, 2013. 6(6): p. 1758-68 [PMID:24157607] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Karumuri S,Bandopadhyay R In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana. Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9 [PMID:25630103] Smykowski A,Zimmermann P,Zentgraf U CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis. Plant Physiol., 2016. 170(2): p. 1164-7 [PMID:26826725] Smykowski A,Fischer SM,Zentgraf U Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1. Plants (Basel), 2015. 4(3): p. 691-709 [PMID:27135347] Giri MK, et al. GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana. Plant J., 2017. 91(5): p. 802-815 [PMID:28622438]