PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G064900.1
Common NameB456_008G064900, LOC105763245
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 254aa    MW: 29386.5 Da    PI: 9.9641
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G064900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.91.5e-29959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krien +nrqvt+skRrngi+KKA+EL vLCda+v++i+fsstgk++e++s
  Gorai.008G064900.1  9 KRIENATNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSSTGKFHEFIS 59
                        79***********************************************86 PP
2K-box90.82.4e-3071159189
               K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                         yqk++g++l+ +++e++q+++++Lk+ +++L+re+R+++G dL++L++keLq Le+++++sl  iR++K++++++q+++ +kk  e + 
  Gorai.008G064900.1  71 YQKTTGTDLWISHYEKMQENYRRLKEINKKLRREIRQRMGGDLDDLNIKELQALETKMDSSLVAIRDRKYHVIKTQTDTHRKKVSESNT 159
                         8999*******************************************************************************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.941161IPR002100Transcription factor, MADS-box
SMARTSM004326.0E-42160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.33E-37295IPR002100Transcription factor, MADS-box
CDDcd002651.32E-39280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-28323IPR002100Transcription factor, MADS-box
PfamPF003193.0E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-283859IPR002100Transcription factor, MADS-box
PfamPF014867.4E-2082157IPR002487Transcription factor, K-box
PROSITE profilePS5129714.80784207IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGRGKIEIKR IENATNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMFSS TGKFHEFISP  60
NISTKAFFDL YQKTTGTDLW ISHYEKMQEN YRRLKEINKK LRREIRQRMG GDLDDLNIKE  120
LQALETKMDS SLVAIRDRKY HVIKTQTDTH RKKVSESNTI KTVACHSISR VLIIFEDWNA  180
LQVRNLEERH ANLVFDLETK LDQQDGIVES EGYYNEAANG ASNLHALRLY QIHHPNLVLH  240
HGGRFGSNDL RLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-15162162MEF2C
5f28_B2e-15162162MEF2C
5f28_C2e-15162162MEF2C
5f28_D2e-15162162MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed during flower development in stamens, petals and carpels (PubMed:17920788). Expressed in fruits and seeds (PubMed:17920788). {ECO:0000269|PubMed:17920788}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1556470.0KC155647.1 Gossypium hirsutum MADS box protein MADS52 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012436841.10.0PREDICTED: floral homeotic protein PMADS 1-like isoform X1
SwissprotQ003J21e-105TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A0D2PPX70.0A0A0D2PPX7_GOSRA; Uncharacterized protein
STRINGGorai.008G064900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52612750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.12e-64MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]