PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G064100.2

Common Name

B456_008G064100, LOC105763238

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

DBB

Protein Properties

Length: 177aa MW: 19237.9 Da PI: 7.7062

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G064100.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.5	5.8e-08	4	33	5	34
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ +++ fC ++ lC+ C ++ H Gorai.008G064100.2 4 LCDACESAPAIVFCAADEAALCRACDEKVH 33 6**************************998 PP
2	zf-B_box	28	4.6e-09	52	92	2	38
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 + ++C+ +e+ ++ ++Ce +++ lC +C + H g H Gorai.008G064100.2 52 DVPRCDICENAPAFFYCEIDGSSLCLQCDMVVHVGgkrtHG 92 6799***************************9966556675 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.352	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	2.08E-6	3	45	No hit	No description
Pfam	PF00643	2.4E-6	4	42	IPR000315	B-box-type zinc finger
SMART	SM00336	1.8E-7	4	47	IPR000315	B-box-type zinc finger
SMART	SM00336	3.1E-11	51	96	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.859	51	96	IPR000315	B-box-type zinc finger
Pfam	PF00643	4.7E-7	52	91	IPR000315	B-box-type zinc finger
CDD	cd00021	8.43E-7	54	84	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MRILCDACES APAIVFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLANP SDVPRCDICE 60 NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRNLLLRQR VEFPGDKPAH IDETRRGQNH 120 PRKTPVGEKQ QNHKVSPVHG ADAAAAAVGH LETDTKMIDL NMKPHRIHGQ ASNNQG*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269\|PubMed:18540109}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012436832.1	1e-128	PREDICTED: B-box zinc finger protein 18-like isoform X1
Refseq	XP_012436833.1	1e-128	PREDICTED: B-box zinc finger protein 19-like isoform X2
Swissprot	C0SVM5	3e-76	BBX19_ARATH; B-box zinc finger protein 19
TrEMBL	A0A0D2TYC4	1e-127	A0A0D2TYC4_GOSRA; Uncharacterized protein
STRING	Gorai.008G064100.1	1e-127	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38960.1	2e-78	DBB family protein

Link Out ? help Back to Top
Phytozome	Gorai.008G064100.2
Entrez Gene	105763238

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]