PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G062800.1

Common Name

B456_008G062800

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 658aa MW: 76692.4 Da PI: 9.4054

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G062800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	21.3	8.7e-07	10	84	9	88
FAR1 9 evGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 ++G+ +++++s k k+ng + t+ C + + + ++++ +++ +++t+Ck +l+ + k + w++ + +HnH+ Gorai.008G062800.1 10 SLGYIIVTRRS-KAKENGVVSYVTLICDRGSEYKFKESS-----KKSGTKKTNCKFQLVGSYLKqYDGWMLRAICDQHNHP 84 56776666655.55699*********98877776555.....89999*****999877699***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-4	8	84	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.4E-26	187	281	IPR018289	MULE transposase domain
SuperFamily	SSF54001	6.18E-6	489	597	No hit	No description
PROSITE profile	PS50802	9.592	520	623	IPR003323	OTU domain

Sequence ? help Back to Top
Protein Sequence Length: 658 aa Download sequence Send to blast
MQWVQNTAFS LGYIIVTRRS KAKENGVVSY VTLICDRGSE YKFKESSKKS GTKKTNCKFQ 60 LVGSYLKQYD GWMLRAICDQ HNHPPAQHMQ GHAYARWLKE NKKKLLVDLT SKNDENNVST 120 QKTIYNARQK LHSSQNVGKT PIQVLMLLLN DKQFFTEFSV NNISNELENL FFIHPRPLDI 180 WRAFPHVLIV DATYKTNKYD LPFQIVGVTS TNKTFSIAFA FIINEKEEKY NWALTCLKLT 240 LEECIYPRVI ATDRKFALMN ACQQVFPDIT RLLCRWHITE NIKKHYSFRA MWTVLVESPT 300 WILYTKNYRK LQSMLSEYPE RTMNRVESHH AKLKKYLSAK KFSLDKFFGC IDQIVKSQLT 360 SIYESFEKSR TILKHKHNLP CFRLLWGFVA LEALDIIEGE LQWKLDLSPS TSVENEDICC 420 DGELKLFKEN FTKQSKAGKK ILLRKLRDIF QPTSRRRSHS TTSKSSVGLD LVELNKEPAR 480 HSSYPSEQVS DFIDLNQMSE SCNTHPLMKE IPDMFHPYIT HVQDVRGDGN CGFRAISICL 540 GYGKDQWLYV RHQLLDELLS SYDIYARVFT DGIDELRNSL CVLIANRFWV ILNYLTKRGD 600 ITFFPLWRGL EHFQYHHAIT IAHVYDNHNV MVQLKGDYPM PTILAYWIRH RAPSTAG*

Sequence ? help Back to Top

Protein Sequence Length: 658 aa Download sequence Send to blast

MQWVQNTAFS LGYIIVTRRS KAKENGVVSY VTLICDRGSE YKFKESSKKS GTKKTNCKFQ  60
LVGSYLKQYD GWMLRAICDQ HNHPPAQHMQ GHAYARWLKE NKKKLLVDLT SKNDENNVST  120
QKTIYNARQK LHSSQNVGKT PIQVLMLLLN DKQFFTEFSV NNISNELENL FFIHPRPLDI  180
WRAFPHVLIV DATYKTNKYD LPFQIVGVTS TNKTFSIAFA FIINEKEEKY NWALTCLKLT  240
LEECIYPRVI ATDRKFALMN ACQQVFPDIT RLLCRWHITE NIKKHYSFRA MWTVLVESPT  300
WILYTKNYRK LQSMLSEYPE RTMNRVESHH AKLKKYLSAK KFSLDKFFGC IDQIVKSQLT  360
SIYESFEKSR TILKHKHNLP CFRLLWGFVA LEALDIIEGE LQWKLDLSPS TSVENEDICC  420
DGELKLFKEN FTKQSKAGKK ILLRKLRDIF QPTSRRRSHS TTSKSSVGLD LVELNKEPAR  480
HSSYPSEQVS DFIDLNQMSE SCNTHPLMKE IPDMFHPYIT HVQDVRGDGN CGFRAISICL  540
GYGKDQWLYV RHQLLDELLS SYDIYARVFT DGIDELRNSL CVLIANRFWV ILNYLTKRGD  600
ITFFPLWRGL EHFQYHHAIT IAHVYDNHNV MVQLKGDYPM PTILAYWIRH RAPSTAG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023749760.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A0D2TY93	0.0	A0A0D2TY93_GOSRA; Uncharacterized protein
STRING	Gorai.008G062800.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-11	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Gorai.008G062800.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]