PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G057500.2 | ||||||||
Common Name | B456_008G057500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NF-YC | ||||||||
Protein Properties | Length: 185aa MW: 21475.6 Da PI: 6.1667 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 121.8 | 2.8e-38 | 55 | 153 | 2 | 98 |
NF-YC 2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 l+ fw +q i + + fk h+lPlarik+i+k+++d misa++P+l+skacelfileltlr+wlh+ee krrtl+ +d+++a+ + + Gorai.008G057500.2 55 LELFWYQQmleIHNISAFKsYHQLPLARIKRIMKSNKD--MISADTPILFSKACELFILELTLRAWLHTEEGKRRTLQGCDVSKAIRQEEA 143 789****96656677889978**************998..9************************************************** PP NF-YC 89 fdflvdivpr 98 fl d+vp Gorai.008G057500.2 144 LHFLFDVVPL 153 ********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.41E-23 | 59 | 148 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.3E-16 | 77 | 138 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.4E-27 | 78 | 152 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MDLNQSMEFT PSATSSPQIH NFMPMTSFML PFHQPSNEDG EEVKQSHLLV QKRSLELFWY 60 QQMLEIHNIS AFKSYHQLPL ARIKRIMKSN KDMISADTPI LFSKACELFI LELTLRAWLH 120 TEEGKRRTLQ GCDVSKAIRQ EEALHFLFDV VPLINHKDDD GKFLEENEHH PVNQPQFPLL 180 DMNA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-30 | 62 | 152 | 3 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012436740.1 | 1e-134 | PREDICTED: nuclear transcription factor Y subunit C-4-like | ||||
Swissprot | Q8LCG7 | 5e-35 | NFYC2_ARATH; Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A0A0D2SZV2 | 1e-134 | A0A0D2SZV2_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G057500.1 | 1e-135 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 2e-37 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G057500.2 |