PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G057400.1
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 287aa    MW: 32701 Da    PI: 8.0734
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G057400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.68.6e-13221245226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ktelC+ + + G C+yG+ C+FaHg
  Gorai.008G057400.1 221 KTELCDKWDEIGSCPYGEHCQFAHG 245
                         8***********************8 PP
2zf-CCCH20.11.1e-06258283126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ykt  Cr  +++ +C+yG rC+F H+
  Gorai.008G057400.1 258 YKTQACRMVLAGQICPYGHRCHFRHS 283
                         9**********99**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.7E-16215252IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.2E-9216251IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.802219247IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-5219246IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-10221245IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-11253286IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-8254285IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.291257285IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5257284IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MEKITSLSSD QDTIFAATAT SCATIYDQNY VSPPPFQTNH QQCHQDIAAD FSSMYNFIFP  60
PHSLPLSPSS CSSSSSNDSH LNLNLTSDAI ATKHRLKQAR LVLEYDQLCD HYNICFARLQ  120
ALNRDIETLR RENSDLLVAN NELMKLLNLS SMAVMNNRNL QRKELPKSVS VRSSNYLKLN  180
HQQSPRNQQR VVNPFLGVQV SSEWRREKAI ELNVYNQGMA KTELCDKWDE IGSCPYGEHC  240
QFAHGITELR PVIRHPRYKT QACRMVLAGQ ICPYGHRCHF RHSLTE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-20221286570Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012436739.10.0PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ9C9N32e-67C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1U8KHT60.0A0A1U8KHT6_GOSHI; zinc finger CCCH domain-containing protein 14-like
STRINGGorai.008G057400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106232533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-69C3H family protein