PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G056000.1

Common Name

B456_008G056000, LOC105763146

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 303aa MW: 32983.4 Da PI: 6.8627

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G056000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.4	1.7e-31	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C++lr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++q Gorai.008G056000.1 4 SCNGCRILRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQ 94 6**************************************************************************************** PP DUF260 87 leqlkaelallke 99 l+q+++e++l ++ Gorai.008G056000.1 95 LCQAAVEAVLKGA 107 *****998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	2.8E-97	1	301	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	17.134	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.3E-25	4	103	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MRMSCNGCRI LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGAPIT PIASEAAANG 120 QGPPLKAYDI RHVSKDENSA ASNDVQRVKT RCRVKRTLKP KVNNPVLEEE NRSSEPPEPR 180 CYADEGFEGN RSTSHESSLS HQSELAVMDG ESKETESMIS EETVAASRLF PAEPEFGGKV 240 SEERTVEGSS EVGLELTLGF KPVMSRACQV VVPVKKRRVE AYGTFEDGQT CKVELGLDYP 300 AA*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012436713.1	0.0	PREDICTED: LOB domain-containing protein 41
Swissprot	Q9M886	1e-113	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A0D2RA77	0.0	A0A0D2RA77_GOSRA; Uncharacterized protein
STRING	Gorai.008G056000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7721	27	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-106	LOB domain-containing protein 41

Link Out ? help Back to Top
Phytozome	Gorai.008G056000.1
Entrez Gene	105763146

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]