PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G041400.1

Common Name

B456_008G041400

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 506aa MW: 56093.7 Da PI: 6.2389

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G041400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.9	2.8e-30	299	358	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ Gorai.008G041400.1 299 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 358 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.2E-32	284	360	IPR003657	WRKY domain
SuperFamily	SSF118290	1.31E-27	292	360	IPR003657	WRKY domain
PROSITE profile	PS50811	28.988	294	360	IPR003657	WRKY domain
SMART	SM00774	3.2E-37	299	359	IPR003657	WRKY domain
Pfam	PF03106	4.0E-27	300	358	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence Send to blast
KSLLTFFLNK IIGLKLGSHP TIKTSLLLTR PCGKGIDFGG SILRENKGLD DVEEINLTDQ 60 NWEMEMDLSL KIDSKEKEED MEESMDSKMQ VEEAEAAEDK EVTSMAAAGE VEDVDAPLEL 120 SLQGNNKTHE LSVLQLEMNR MKEENKELRK VVEKTMQDYY DLQMKFAVIQ KNDHKQDPPI 180 FLSLNGNGNG NGNSSQDQQP IQRNLNIGNH QKHGPSEGDH NDEKNEEELG LSLRLQISSS 240 QREREEEHNK EGSEETPNVA SEQNKLQPTC LSAITSHAVS PPNRKARVSV RARCQTATMN 300 DGCQWRKYGQ KIAKGNPCPR AYYRCTVAPG CPVRKQVQRC LEDMSILITT YEGTHNHPLP 360 VGATAMASTA SAAADSFMFL DSSNPLSNGI PNLSQASLPY QNHPHLMKSH RNVMNFTDPS 420 KGTILDLTNN RHVNHHFPTA SSSSSHHPSP AFPWMPSRLS NGTSSRQWKS QEDKSLAENV 480 TAIASDPKFR VAVAAAITSL INKES*

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence Send to blast

KSLLTFFLNK IIGLKLGSHP TIKTSLLLTR PCGKGIDFGG SILRENKGLD DVEEINLTDQ  60
NWEMEMDLSL KIDSKEKEED MEESMDSKMQ VEEAEAAEDK EVTSMAAAGE VEDVDAPLEL  120
SLQGNNKTHE LSVLQLEMNR MKEENKELRK VVEKTMQDYY DLQMKFAVIQ KNDHKQDPPI  180
FLSLNGNGNG NGNSSQDQQP IQRNLNIGNH QKHGPSEGDH NDEKNEEELG LSLRLQISSS  240
QREREEEHNK EGSEETPNVA SEQNKLQPTC LSAITSHAVS PPNRKARVSV RARCQTATMN  300
DGCQWRKYGQ KIAKGNPCPR AYYRCTVAPG CPVRKQVQRC LEDMSILITT YEGTHNHPLP  360
VGATAMASTA SAAADSFMFL DSSNPLSNGI PNLSQASLPY QNHPHLMKSH RNVMNFTDPS  420
KGTILDLTNN RHVNHHFPTA SSSSSHHPSP AFPWMPSRLS NGTSSRQWKS QEDKSLAENV  480
TAIASDPKFR VAVAAAITSL INKES*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-22	286	362	1	76	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by potassium deprivation. {ECO:0000269\|PubMed:15173595}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF669830	0.0	KF669830.1 Gossypium hirsutum WRKY transcription factor 81 (WRKY81) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012436449.1	0.0	PREDICTED: probable WRKY transcription factor 9
Swissprot	Q9C9F0	3e-80	WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBL	A0A0D2SUF9	0.0	A0A0D2SUF9_GOSRA; Uncharacterized protein (Fragment)
STRING	Gorai.008G041400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6736	27	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	8e-69	WRKY DNA-binding protein 9

Link Out ? help Back to Top
Phytozome	Gorai.008G041400.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]