PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G041100.2

Common Name

B456_008G041100

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 686aa MW: 76410.2 Da PI: 6.3506

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G041100.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	20.9	7e-07	629	653	2	26
RWP-RK 2 ekeisledlskyFslpikdAAkeLg 26 ek+isl++l++yF++++kdAAk++g Gorai.008G041100.2 629 EKTISLQVLRQYFAGSLKDAAKSIG 653 799********************98 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 686 aa Download sequence Send to blast
MEGGGGGFSP NSTTFGNLSD AAMDLDFMDQ LLVEGCWLET SDGFNFMQPA PSTSTPSPHC 60 FPVSGSNTFP FTINPHQMHQ GETDMQFAPS QTDNLSKTQS KNWGGVENAS SLSQTGSFIV 120 EGTEMGSRWW IGPKAESGSS LSVKERLMQA IKYLKESTKD RDVLIQIWVP VTREGKHVLT 180 TEGQPYSVNT NSKSLKIFRD VSKSYNFPAE EDSNKSVGLP GRVFLGKLPE WTPDVRFFRS 240 EEYPRVSFAL KYNVGGSLAL PVFERASGTC LGVVEVVTTA QKINYHPELE YVCKALEAVD 300 LRTSHNFSPP NVEACNELYQ AALPEIAEVL RSVCKTYKLP LALTWAPCLS QGKSGCRHSD 360 ENYYNCVSTV DAACFVADDK FLGFLEACSE HHLFRGQGIV GRAFTTDKKW FATDITAFSK 420 TNYPLSHHAR MFKLRGALAI PLQSIFTGLV EFVLELFFPK DCHESEAQQQ MLNSLSSFMQ 480 QACQSLHVVM DKELEEEVIL PVKEAVVASD GISDKEETKF KISSPNENSP EESSWIAHMM 540 EAQQKGKGVY VSWEYQKEEP KEEFKMTTSW EETRQELYNK QVLSDFGLLH QNAGSIASLE 600 GGGGDSSSSG GRHIFARKKA GEKRRTKMEK TISLQVLRQY FAGSLKDAAK SIGGRKIFHL 660 YLEASHSFFT LCSTKHYLVY RSNYH*

Sequence ? help Back to Top

Protein Sequence Length: 686 aa Download sequence Send to blast

MEGGGGGFSP NSTTFGNLSD AAMDLDFMDQ LLVEGCWLET SDGFNFMQPA PSTSTPSPHC  60
FPVSGSNTFP FTINPHQMHQ GETDMQFAPS QTDNLSKTQS KNWGGVENAS SLSQTGSFIV  120
EGTEMGSRWW IGPKAESGSS LSVKERLMQA IKYLKESTKD RDVLIQIWVP VTREGKHVLT  180
TEGQPYSVNT NSKSLKIFRD VSKSYNFPAE EDSNKSVGLP GRVFLGKLPE WTPDVRFFRS  240
EEYPRVSFAL KYNVGGSLAL PVFERASGTC LGVVEVVTTA QKINYHPELE YVCKALEAVD  300
LRTSHNFSPP NVEACNELYQ AALPEIAEVL RSVCKTYKLP LALTWAPCLS QGKSGCRHSD  360
ENYYNCVSTV DAACFVADDK FLGFLEACSE HHLFRGQGIV GRAFTTDKKW FATDITAFSK  420
TNYPLSHHAR MFKLRGALAI PLQSIFTGLV EFVLELFFPK DCHESEAQQQ MLNSLSSFMQ  480
QACQSLHVVM DKELEEEVIL PVKEAVVASD GISDKEETKF KISSPNENSP EESSWIAHMM  540
EAQQKGKGVY VSWEYQKEEP KEEFKMTTSW EETRQELYNK QVLSDFGLLH QNAGSIASLE  600
GGGGDSSSSG GRHIFARKKA GEKRRTKMEK TISLQVLRQY FAGSLKDAAK SIGGRKIFHL  660
YLEASHSFFT LCSTKHYLVY RSNYH*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012436443.1	0.0	PREDICTED: protein NLP2-like
Refseq	XP_012436444.1	0.0	PREDICTED: protein NLP2-like
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	A0A0D2R8Y9	0.0	A0A0D2R8Y9_GOSRA; Uncharacterized protein
STRING	Gorai.008G041100.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.008G041100.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]