PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G041100.1

Common Name

B456_008G041100, LOC105762989

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 950aa MW: 104460 Da PI: 6.7011

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G041100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.4	7e-29	629	679	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ Gorai.008G041100.1 629 EKTISLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 679 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.348	618	699	IPR003035	RWP-RK domain
Pfam	PF02042	1.0E-24	631	679	IPR003035	RWP-RK domain
SuperFamily	SSF54277	6.13E-24	847	938	No hit	No description
Gene3D	G3DSA:3.10.20.240	4.0E-24	851	932	No hit	No description
SMART	SM00666	3.1E-28	852	935	IPR000270	PB1 domain
PROSITE profile	PS51745	28.239	852	935	IPR000270	PB1 domain
CDD	cd06407	1.15E-43	853	934	No hit	No description
Pfam	PF00564	9.2E-20	853	934	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 950 aa Download sequence Send to blast
MEGGGGGFSP NSTTFGNLSD AAMDLDFMDQ LLVEGCWLET SDGFNFMQPA PSTSTPSPHC 60 FPVSGSNTFP FTINPHQMHQ GETDMQFAPS QTDNLSKTQS KNWGGVENAS SLSQTGSFIV 120 EGTEMGSRWW IGPKAESGSS LSVKERLMQA IKYLKESTKD RDVLIQIWVP VTREGKHVLT 180 TEGQPYSVNT NSKSLKIFRD VSKSYNFPAE EDSNKSVGLP GRVFLGKLPE WTPDVRFFRS 240 EEYPRVSFAL KYNVGGSLAL PVFERASGTC LGVVEVVTTA QKINYHPELE YVCKALEAVD 300 LRTSHNFSPP NVEACNELYQ AALPEIAEVL RSVCKTYKLP LALTWAPCLS QGKSGCRHSD 360 ENYYNCVSTV DAACFVADDK FLGFLEACSE HHLFRGQGIV GRAFTTDKKW FATDITAFSK 420 TNYPLSHHAR MFKLRGALAI PLQSIFTGLV EFVLELFFPK DCHESEAQQQ MLNSLSSFMQ 480 QACQSLHVVM DKELEEEVIL PVKEAVVASD GISDKEETKF KISSPNENSP EESSWIAHMM 540 EAQQKGKGVY VSWEYQKEEP KEEFKMTTSW EETRQELYNK QVLSDFGLLH QNAGSIASLE 600 GGGGDSSSSG GRHIFARKKA GEKRRTKMEK TISLQVLRQY FAGSLKDAAK SIGVCPTTLK 660 RICRQHGITR WPSRKIKKVG HSLRKLQLVI DSVQGAEGAI QIGSFYSSFP ELSSPNFSGK 720 GPSSSKISNQ SKPSEPQIQS GVLSQGAAAA APKSPSSSCS QSSGSSTCCS TGAKQRSTSI 780 SALCSTDGLT VENPEGALKR ALSDADLQAL NQEEPKLLAR SQSHKTFGEL PSFETKPPLP 840 KSGGHKLRTA GAIKVKVMYR EDKVRLSLQP SWGFKDLQQE IGRRFNIEDV SRIDLKYLDD 900 DEEWVLLTCD ADLEECVDIY KSSQSKTIKI SLEQASHPNL GTSFGSSAP*

Sequence ? help Back to Top

Protein Sequence Length: 950 aa Download sequence Send to blast

MEGGGGGFSP NSTTFGNLSD AAMDLDFMDQ LLVEGCWLET SDGFNFMQPA PSTSTPSPHC  60
FPVSGSNTFP FTINPHQMHQ GETDMQFAPS QTDNLSKTQS KNWGGVENAS SLSQTGSFIV  120
EGTEMGSRWW IGPKAESGSS LSVKERLMQA IKYLKESTKD RDVLIQIWVP VTREGKHVLT  180
TEGQPYSVNT NSKSLKIFRD VSKSYNFPAE EDSNKSVGLP GRVFLGKLPE WTPDVRFFRS  240
EEYPRVSFAL KYNVGGSLAL PVFERASGTC LGVVEVVTTA QKINYHPELE YVCKALEAVD  300
LRTSHNFSPP NVEACNELYQ AALPEIAEVL RSVCKTYKLP LALTWAPCLS QGKSGCRHSD  360
ENYYNCVSTV DAACFVADDK FLGFLEACSE HHLFRGQGIV GRAFTTDKKW FATDITAFSK  420
TNYPLSHHAR MFKLRGALAI PLQSIFTGLV EFVLELFFPK DCHESEAQQQ MLNSLSSFMQ  480
QACQSLHVVM DKELEEEVIL PVKEAVVASD GISDKEETKF KISSPNENSP EESSWIAHMM  540
EAQQKGKGVY VSWEYQKEEP KEEFKMTTSW EETRQELYNK QVLSDFGLLH QNAGSIASLE  600
GGGGDSSSSG GRHIFARKKA GEKRRTKMEK TISLQVLRQY FAGSLKDAAK SIGVCPTTLK  660
RICRQHGITR WPSRKIKKVG HSLRKLQLVI DSVQGAEGAI QIGSFYSSFP ELSSPNFSGK  720
GPSSSKISNQ SKPSEPQIQS GVLSQGAAAA APKSPSSSCS QSSGSSTCCS TGAKQRSTSI  780
SALCSTDGLT VENPEGALKR ALSDADLQAL NQEEPKLLAR SQSHKTFGEL PSFETKPPLP  840
KSGGHKLRTA GAIKVKVMYR EDKVRLSLQP SWGFKDLQQE IGRRFNIEDV SRIDLKYLDD  900
DEEWVLLTCD ADLEECVDIY KSSQSKTIKI SLEQASHPNL GTSFGSSAP*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012436443.1	0.0	PREDICTED: protein NLP2-like
Refseq	XP_012436444.1	0.0	PREDICTED: protein NLP2-like
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	A0A0D2PNI4	0.0	A0A0D2PNI4_GOSRA; Uncharacterized protein
STRING	Gorai.008G041100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.008G041100.1
Entrez Gene	105762989

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]