PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G031100.3
Common NameB456_008G031100, LOC105762880
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 680aa    MW: 74678.9 Da    PI: 5.5247
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G031100.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.93.9e-094204571954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +++  LA+++gLt +qV +WF N R +
  Gorai.008G031100.3 420 FEHflHPYPKDSDKIMLARQTGLTRSQVANWFINARVR 457
                         664459******************************88 PP
2BELL125.91.6e-40282353172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         e+qelq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iS hFrcL+dai +qi
  Gorai.008G031100.3 282 EKQELQSKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISCHFRCLRDAINGQI 353
                         689*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.0E-62205351IPR006563POX domain
PfamPF075262.3E-51211349IPR006563POX domain
PROSITE profilePS5007112.082398461IPR001356Homeobox domain
CDDcd000868.49E-13401462No hitNo description
SMARTSM003891.7E-9401465IPR001356Homeobox domain
SuperFamilySSF466895.56E-17402468IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-28404467IPR009057Homeodomain-like
PfamPF059201.3E-17418457IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MATYDTGSDN QKDTAPMIYF RESMPGSFPE APVLPGNAIM YMNSGSYLDA FAGNSQQQNN  60
CVEILAVEAS DSTPQQQEIL SNLGGSRVGD FGTWRDGRNE ILVMHPMDGT ASILHSGQNL  120
QGQGLSLSLG TQIPSGIQMT SIPYRNPNST FASFLSPNPT LTGEGGSRTS SCRDEQSRNA  180
EYVPPGFSGG NQDSNKGDLS AYGMSSTSRT IPNSKYLKAV QQLLDEVVNV RMALKQCNGE  240
KNQSSEDNRM KSSKEDDGGS KKMPSNRQES SNNTPNQLSQ AEKQELQSKL TKLLSMLDEV  300
DRRYKQYYHQ MQIVVSSFDV IAGCGAAKPY TALALQTISC HFRCLRDAIN GQIRATRKSL  360
GEQDTSENGK GVGITRLRYV DQQLRQQRAL QQLGMMQQHA WRPQRGLPES SVSILRAWLF  420
EHFLHPYPKD SDKIMLARQT GLTRSQVANW FINARVRLWK PMVEEMYKEE FADAEMDSNS  480
SSENAVKATK GDTRTSEDRG EDVQQSESSL AIERCDTRQL VDSKPNPVPS LVDMAGPVTG  540
AGFQYFTRGE TETEHMLLQL REEQRPNIDD SNLFPNAISH PDGDSGRIMA VAAYQMSGFG  600
NFGNRSSVSL TLGLQHCEGG NIPISGGGHQ DFVAMRGDDI CNPTASTVGA AETSDFECIN  660
PGNRQHGFSS SHLLHDFVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A3e-16407464158Homeobox protein Meis1
4xrs_B3e-16407464158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012436283.10.0PREDICTED: BEL1-like homeodomain protein 6
TrEMBLA0A0D2PN450.0A0A0D2PN45_GOSRA; Uncharacterized protein
STRINGGorai.008G031100.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-138BEL1-like homeodomain 6
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]