PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G027200.1 | ||||||||
Common Name | B456_008G027200, LOC105762842 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 375aa MW: 42111.4 Da PI: 7.4033 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 24.5 | 6.1e-08 | 245 | 291 | 17 | 63 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 A+rsR RK+++i+eLe+ v++L+ae ++ ele l+++ l +e+ Gorai.008G027200.1 245 AQRSRVRKLQYIAELERNVQALQAEGSEVSAELEFLNQQNLILNMEN 291 89************************************998888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.8E-4 | 234 | 293 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 2.33E-15 | 237 | 284 | No hit | No description |
SuperFamily | SSF57959 | 7.74E-6 | 245 | 287 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 6.1E-8 | 245 | 287 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MANSKGSTNI RDSIYAGKHA LLPPKCPFPT VSQPFTDYVS NNVIGLVQNP REGNTHHMRT 60 SSESFLIEDQ PSWLDDLLNE PDITPMRRGG HRRSSSDSFA YIDVSNARNL DYAAQEEYRY 120 KNMISAPSWA SLEFDYHSKT DAQLAAFYND VNLVKQKNRP WDSSLNAVTH SSGLPSRREN 180 SILQGSGSSC ALKEVESAPS TASEKQDSAE SSSLEAKVYS EKKDNSYAKS SSSDSDTKRA 240 KQQFAQRSRV RKLQYIAELE RNVQALQAEG SEVSAELEFL NQQNLILNME NKALKQRLES 300 LAQEQLIKHL EHEVLEREIG RLRVLYQQQQ QQQQQHQKQK PSSSSSSSHR PSSSRDLDSQ 360 FANLSLKHKD ANSG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF147888 | 6e-82 | EF147888.1 Populus trichocarpa clone WS0125_L14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012436226.1 | 0.0 | PREDICTED: uncharacterized protein At4g06598-like | ||||
Refseq | XP_012436227.1 | 0.0 | PREDICTED: uncharacterized protein At4g06598-like | ||||
Refseq | XP_012436228.1 | 0.0 | PREDICTED: uncharacterized protein At4g06598-like | ||||
Refseq | XP_012436229.1 | 0.0 | PREDICTED: uncharacterized protein At4g06598-like | ||||
Swissprot | Q8W3M7 | 9e-70 | Y4598_ARATH; Uncharacterized protein At4g06598 | ||||
TrEMBL | A0A0D2SZB4 | 0.0 | A0A0D2SZB4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G027200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3360 | 24 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58110.2 | 1e-101 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G027200.1 |
Entrez Gene | 105762842 |
Publications ? help Back to Top | |||
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