PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G027000.1
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 100aa    MW: 11365.1 Da    PI: 9.657
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G027000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.83.8e-13495190
                        EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
                        f+k+lt+  v ++  l+lp++ + +    +g++e ++tl+++d  g+  +++++   +++++ v+++ W  Fvk+++L++gD+v F+ d++++
  Gorai.008G027000.1  4 FVKALTTIEVERR--LILPRESLPALprfEGSHEHGITLQVKDDAGNLRNFRCKKgYGGGDKLVIETDWILFVKSKKLRSGDVVAFYKDDDRS 94
                        8899988888875..9******998899999999*******************665556666*************************666555 PP

                        E CS
                  B3 90 f 90
                        f
  Gorai.008G027000.1 95 F 95
                        5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100177.48E-11394No hitNo description
SuperFamilySSF1019361.19E-10396IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.6E-15396IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0038498IPR003340B3 DNA binding domain
PfamPF023621.5E-10495IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MQLFVKALTT IEVERRLILP RESLPALPRF EGSHEHGITL QVKDDAGNLR NFRCKKGYGG  60
GDKLVIETDW ILFVKSKKLR SGDVVAFYKD DDRSFRDIV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435300.15e-63PREDICTED: B3 domain-containing protein Os04g0581400-like
TrEMBLA0A0D2SZA71e-61A0A0D2SZA7_GOSRA; Uncharacterized protein (Fragment)
STRINGGorai.008G027000.16e-67(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2216735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.11e-07B3 family protein