PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G026300.4 | ||||||||
Common Name | B456_008G026300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | G2-like | ||||||||
Protein Properties | Length: 233aa MW: 25536.3 Da PI: 9.5313 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.8 | 2.5e-33 | 87 | 142 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+ Gorai.008G026300.4 87 KQRRCWSPELHRRFVNALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 142 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.115 | 84 | 144 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.61E-18 | 84 | 145 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.6E-30 | 85 | 145 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-27 | 87 | 142 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.7E-8 | 89 | 140 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MPFKMNLGFA VRKEEKEEIP VHGLTLLTPG IKNLKEESCS TGSRTSCSRA VSSSAPNAQS 60 TFRSVPQPLS HHQQQQQQQQ QQQTARKQRR CWSPELHRRF VNALQQLGGS QVATPKQIRE 120 LMQVDGLTND EVKSHLQKYR LHTRRVPAST TSPANQSVVV LGSGLWMSQD QYGESSKGSS 180 SQSGSPQGPL QLATNTGGTS NPGGDSMEDD EDAKSESYSW KSHIHKPGKD DV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-13 | 87 | 140 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-13 | 87 | 140 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-13 | 87 | 140 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-13 | 87 | 140 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00193 | DAP | Transfer from AT1G49560 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012436209.1 | 1e-170 | PREDICTED: uncharacterized protein LOC105762834 | ||||
Swissprot | Q9FX84 | 3e-48 | HHO6_ARATH; Transcription factor HHO6 | ||||
TrEMBL | A0A0D2PMU3 | 1e-171 | A0A0D2PMU3_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A0D2STM1 | 1e-170 | A0A0D2STM1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G026300.1 | 1e-170 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49560.1 | 2e-37 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G026300.4 |
Publications ? help Back to Top | |||
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