PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G026300.2

Common Name

B456_008G026300, LOC105762834

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 327aa MW: 36257 Da PI: 9.1848

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G026300.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105	4.4e-33	181	236	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+ Gorai.008G026300.2 181 KQRRCWSPELHRRFVNALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 236 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.51E-18	178	239	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.115	178	238	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-29	179	239	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-27	181	236	IPR006447	Myb domain, plants
Pfam	PF00249	4.6E-8	183	234	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MSRNVEPVLE EFIPLKNKKE NNRSEEDGAL ITNKKEKDSN NNCNNNKDKK NWMSSVQLWN 60 TDDDYSSISH KLDSKRKDGD SSQGCKNRGT ATAFMPFKMN LGFAVRKEEK EEIPVHGLTL 120 LTPGIKNLKE ESCSTGSRTS CSRAVSSSAP NAQSTFRSVP QPLSHHQQQQ QQQQQQQTAR 180 KQRRCWSPEL HRRFVNALQQ LGGSQVATPK QIRELMQVDG LTNDEVKSHL QKYRLHTRRV 240 PASTTSPANQ SVVVLGSGLW MSQDQYGESS KGSSSQSGSP QGPLQLATNT GGTSNPGGDS 300 MEDDEDAKSE SYSWKSHIHK PGKDDV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-13	181	234	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-13	181	234	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-13	181	234	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-13	181	234	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00193	DAP	Transfer from AT1G49560	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012436209.1	0.0	PREDICTED: uncharacterized protein LOC105762834
TrEMBL	A0A0D2STM1	0.0	A0A0D2STM1_GOSRA; Uncharacterized protein
TrEMBL	A0A0D2SZ85	0.0	A0A0D2SZ85_GOSRA; Uncharacterized protein
STRING	Gorai.008G026300.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49560.1	2e-36	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.008G026300.2
Entrez Gene	105762834

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]