PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G026300.1

Common Name

B456_008G026300, LOC105762834

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 410aa MW: 45634.2 Da PI: 8.5618

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G026300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.5	6.2e-33	264	319	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+ Gorai.008G026300.1 264 KQRRCWSPELHRRFVNALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 319 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.115	261	321	IPR017930	Myb domain
SuperFamily	SSF46689	3.58E-18	261	322	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-29	262	322	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-27	264	319	IPR006447	Myb domain, plants
Pfam	PF00249	6.4E-8	266	317	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MGSVPPELSL DFRPTFVPKT ICTFLKEVSL IGNVPDKVSK LDAFVKRLEE EMRKIDAFKR 60 ELPLCMLLLN DAIVALKEES VQCMSRNVEP VLEEFIPLKN KKENNRSEED GALITNKKEK 120 DSNNNCNNNK DKKNWMSSVQ LWNTDDDYSS ISHKLDSKRK DGDSSQGCKN RGTATAFMPF 180 KMNLGFAVRK EEKEEIPVHG LTLLTPGIKN LKEESCSTGS RTSCSRAVSS SAPNAQSTFR 240 SVPQPLSHHQ QQQQQQQQQQ TARKQRRCWS PELHRRFVNA LQQLGGSQVA TPKQIRELMQ 300 VDGLTNDEVK SHLQKYRLHT RRVPASTTSP ANQSVVVLGS GLWMSQDQYG ESSKGSSSQS 360 GSPQGPLQLA TNTGGTSNPG GDSMEDDEDA KSESYSWKSH IHKPGKDDV*

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MGSVPPELSL DFRPTFVPKT ICTFLKEVSL IGNVPDKVSK LDAFVKRLEE EMRKIDAFKR  60
ELPLCMLLLN DAIVALKEES VQCMSRNVEP VLEEFIPLKN KKENNRSEED GALITNKKEK  120
DSNNNCNNNK DKKNWMSSVQ LWNTDDDYSS ISHKLDSKRK DGDSSQGCKN RGTATAFMPF  180
KMNLGFAVRK EEKEEIPVHG LTLLTPGIKN LKEESCSTGS RTSCSRAVSS SAPNAQSTFR  240
SVPQPLSHHQ QQQQQQQQQQ TARKQRRCWS PELHRRFVNA LQQLGGSQVA TPKQIRELMQ  300
VDGLTNDEVK SHLQKYRLHT RRVPASTTSP ANQSVVVLGS GLWMSQDQYG ESSKGSSSQS  360
GSPQGPLQLA TNTGGTSNPG GDSMEDDEDA KSESYSWKSH IHKPGKDDV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-14	264	317	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-14	264	317	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	7e-14	264	317	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-14	264	317	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-14	264	317	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-14	264	317	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-14	264	317	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-14	264	317	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-14	264	317	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-14	264	317	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-14	264	317	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-14	264	317	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00193	DAP	Transfer from AT1G49560	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012436209.1	0.0	PREDICTED: uncharacterized protein LOC105762834
TrEMBL	A0A0D2SZ85	0.0	A0A0D2SZ85_GOSRA; Uncharacterized protein
STRING	Gorai.008G026300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14535	10	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	8e-50	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.008G026300.1
Entrez Gene	105762834

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]