PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G025100.1 | ||||||||
Common Name | B456_008G025100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 319aa MW: 35178.6 Da PI: 9.6888 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.3 | 2.5e-20 | 163 | 212 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ r +r++lg+f taeeAa+a+++a+ ++g Gorai.008G025100.1 163 NYRGVRQRP-WGKWAAEIRDPR----RaTRVWLGTFNTAEEAARAYDKAAIDFRG 212 59*******.**********82....48**********************98887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.84E-34 | 162 | 220 | No hit | No description |
PROSITE profile | PS51032 | 25.146 | 163 | 220 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-22 | 163 | 221 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.0E-33 | 163 | 220 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.7E-14 | 163 | 212 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.9E-40 | 163 | 226 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-12 | 164 | 175 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-12 | 186 | 202 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MKGKWKTRVQ CTTPNKVRDF SQFTSTSLSR LHRDLSRLRR RLMSPPPPPL HPLSSEQEIS 60 VMVSTLKNVI TGSTPSSSSA DLRFDFGAPG GSASTFTGGF NADRGNMVFQ VSEVLDKCHV 120 CKFDGCLGCN LFPPSQQEEK KGTTSATTTT SAIKTKTKRV KKNYRGVRQR PWGKWAAEIR 180 DPRRATRVWL GTFNTAEEAA RAYDKAAIDF RGPRAKLNFP FPDSNSKADV IPPPPAAATA 240 VGFDHEISTR SVQKEKERND VISMEMDTEK GLGSTEFWDA IGEDEIQQWM MTMSEFGGDS 300 YSSDSATTTV TTGNVHTF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-22 | 162 | 221 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC713909 | 0.0 | KC713909.1 Gossypium hirsutum ethylene-responsive transcription factor 10 (ERF10) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012436197.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF109-like | ||||
TrEMBL | A0A0D2R7R8 | 0.0 | A0A0D2R7R8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G025100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 1e-31 | redox responsive transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G025100.1 |
Publications ? help Back to Top | |||
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