PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G024700.4 | ||||||||
Common Name | B456_008G024700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 415aa MW: 44983.5 Da PI: 9.7858 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 45 | 2.4e-14 | 347 | 397 | 5 | 55 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++ N++L+k+ ee+ ++ Gorai.008G024700.4 347 RRQRRMIKNRESAARSRARKQAYTLELEAEVAKLKEINEELQKKQEEMMEM 397 79****************************************999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.5E-12 | 343 | 406 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.818 | 345 | 396 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 4.77E-27 | 347 | 401 | No hit | No description |
SuperFamily | SSF57959 | 1.19E-10 | 347 | 397 | No hit | No description |
Pfam | PF00170 | 7.9E-13 | 347 | 397 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.2E-14 | 347 | 396 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 350 | 365 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MGSHLNFKNF GDAPSMEGNE SKPLGNFPLT RQSSIYSLTF DELQNTFSGI GKDFGSMNMD 60 ELLKNISTAE ETQAFMTATV PGGEGSLSGG NLQRQGSLTL PRTLSQKTVD EVWRNLMKEN 120 DGAKDGSSGG GGGGGANLPQ RQRTLGEMTL EEFLVKAGVV REDMQQFGVP NNTGFFGNNN 180 SGVALGFQQI NRNNGFLSNN NSVLSQPPRL PQNMTGTKSS QPQQQQQQQQ QPPQQQQQPQ 240 ARPLFPKQQT VAFAPSMHLM NTTQLASPGG RSSMVGIGDP SMNSNIVQSS GLQSGGMGIV 300 GIGSPGSQIS SDVISKNSVD TSSLSPVPYV FGRGRKCSAA LEKVVERRQR RMIKNRESAA 360 RSRARKQAYT LELEAEVAKL KEINEELQKK QEEMMEMQKI QVMLISSIST LHLY* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:11884679}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the ABA-responsive element (ABRE). Mediates stress-responsive ABA signaling. {ECO:0000269|PubMed:11884679, ECO:0000269|PubMed:15361142}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00038 | PBM | Transfer from AT4G34000 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA). {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:16284313}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ527484 | 1e-118 | HQ527484.1 Gossypium herbaceum clone NBRI_E_EYT27PB03G3LVN simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012436192.1 | 0.0 | PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 | ||||
Swissprot | Q9M7Q3 | 1e-110 | AI5L6_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 6 | ||||
TrEMBL | A0A0D2PMR4 | 0.0 | A0A0D2PMR4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G024700.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49720.2 | 1e-80 | abscisic acid responsive element-binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G024700.4 |