PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G021500.1
Common NameB456_008G021500, LOC105762784
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HB-PHD
Protein Properties Length: 834aa    MW: 92857.5 Da    PI: 4.7716
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G021500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox38.81.6e-127618031052
                         HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
            Homeobox  10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                            ++L+e F++n+yp+++++e LAk+l++t  qV+ WF N R
  Gorai.008G021500.1 761 AVKQRLNESFKENQYPDRSTKESLAKELDITFHQVSKWFDNAR 803
                         56799************************************99 PP
2PHD39.41.4e-13412467151
                         SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                 PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                         +C+ Cg+     +++++lCdg C++ fH++Cl+++l +e++p +   wlC+ C++k
  Gorai.008G021500.1 412 FCAKCGSkdLSPNNDIILCDGaCDRGFHQYCLQPPLLKEDIPPDdeGWLCPGCDCK 467
                         6999**966666********66*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.26E-14402470IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.0E-13408467IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.145410467IPR019787Zinc finger, PHD-finger
CDDcd155043.18E-28412464No hitNo description
PfamPF006284.3E-11412467IPR019787Zinc finger, PHD-finger
SMARTSM002492.6E-10412465IPR001965Zinc finger, PHD-type
PROSITE patternPS013590413464IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.603.7E-12748803IPR009057Homeodomain-like
SuperFamilySSF466891.15E-11749806IPR009057Homeodomain-like
SMARTSM003892.2E-9752813IPR001356Homeobox domain
CDDcd000862.17E-10756803No hitNo description
PfamPF000464.8E-10761803IPR001356Homeobox domain
PROSITE profilePS5007112.115766809IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 834 aa     Download sequence    Send to blast
MIKVEHMGAS PSQAKSKKGN HVFPEENTSE QGHEIEIATG VSCSSIHKSS SENVANGSCP  60
EPLRLLPKGV SEHNHTDQSF CAQETVPGKT HEYHSGYVHK ETSEKKHQPG SEIVKIKLEE  120
SRSWVCGLPA KHSKPFSKGL SKNAITEGLG LSPAGSNKDN IRREPSKPPE QGPQLELESL  180
PNSTEQSTTA VCTNVFNQAL QLNPEDTNKS NCDKLLQSPS QGAHNVIQST NIEDMAKNSS  240
VEQHETTSEN FSQSKDGKTL KTIKKKYMLR SSTNNDRALP SNSQEKSKPG QLSNNLVDVA  300
SSEQRQRRKK KRREKREVVG EYSRIRGHLR YLLNRISYER SLIAVYSAEG WKGQSLEKLK  360
PEKELQRATS EILRRKLKIK DLFKRIDSLC AEGRLPESLF DSEGQIDSED IFCAKCGSKD  420
LSPNNDIILC DGACDRGFHQ YCLQPPLLKE DIPPDDEGWL CPGCDCKVDC IQLLNEFQGT  480
SFSLTDNWEK VFPEALVSED GENQYPNFRL RSDDSNDNDY NPDGSETGEK GEGDESSSDE  540
SDSTFSFEEW EVPANVDPNL GEFPSDDAEG DDDDDYDPNG SNHDTETSRE SSSSDFTFDS  600
EDLGYMLEDD IASQKDEDPM SNSASTVSKR RKSKCGGKES LKDELLSILE STSEQDGAAV  660
SKKRNNERLD YKRLYDETYG NIPSSSSDDE DWNDATTSRK RMKCTIRATP TLPNGNACAS  720
RSEETNFNDT DLSLAEEGGV TVSGSSGKKW GSSTYRRLGE AVKQRLNESF KENQYPDRST  780
KESLAKELDI TFHQVSKWFD NARWSFNNSS SIHETATEKV SENEIPSALE TKN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305312QRRKKKRR
2306311RRKKKR
3306312RRKKKRR
4306313RRKKKRRE
5307314RKKKRREK
6307315RKKKRREKR
7308312KKKRR
8308315KKKRREKR
9309314KKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6143197e-77JX614319.1 Gossypium hirsutum clone NBRI_GE57612 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012436135.10.0PREDICTED: homeobox protein HAT3.1-like isoform X2
TrEMBLA0A0D2ST960.0A0A0D2ST96_GOSRA; Uncharacterized protein
STRINGGorai.008G021500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72702543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.12e-94Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]