PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G017800.3
Common NameB456_008G017800
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 306aa    MW: 32674.7 Da    PI: 6.9048
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G017800.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.14.3e-17224260135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cg ++  Tp++Rrgp g++tLCnaCGl+++ kg+
  Gorai.008G017800.3 224 CTHCGISSkkTPMMRRGPAGPRTLCNACGLKWANKGV 260
                         *****88888************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.76384119IPR010399Tify domain
SMARTSM009793.4E-1184119IPR010399Tify domain
PfamPF062001.9E-1288118IPR010399Tify domain
PROSITE profilePS5101713.205151193IPR010402CCT domain
PfamPF062035.8E-16151193IPR010402CCT domain
SMARTSM004011.3E-11218271IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-12221270No hitNo description
Gene3DG3DSA:3.30.50.102.5E-15223265IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440224251IPR000679Zinc finger, GATA-type
PfamPF003205.2E-14224260IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.748224266IPR000679Zinc finger, GATA-type
CDDcd002021.98E-15224273No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MANSNHQRTP MYGSGAANMQ RNIDEEEDDD VPGGAGGGGE ESVDNPQIGF QENGAVVAVM  60
NNGMDEASHA HVYGQGSDST SAPGNGGADQ LTLSFQGEVY VFDSVSPDKV QAVLLLLGGY  120
EIPSGIPAMG TVSVTQRGLS DFPGRSIQPQ RAASLNRFRE KRKERCFEKK IRYTVRKEVA  180
LRMQRKKGQF TSSKAISEEV ASASSGWSGT PGSGQDENIQ EVLCTHCGIS SKKTPMMRRG  240
PAGPRTLCNA CGLKWANKGV LRDLSKVSTV AIPDPTVKTA EQVLLAQNNS IDDCYLLPFF  300
IVIKS*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012436064.10.0PREDICTED: GATA transcription factor 24-like isoform X2
SwissprotQ8GXL75e-76GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A0D2SYL50.0A0A0D2SYL5_GOSRA; Uncharacterized protein
STRINGGorai.008G017800.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-70ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]