PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G017800.2 | ||||||||
Common Name | B456_008G017800, LOC105762740 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GATA | ||||||||
Protein Properties | Length: 315aa MW: 33287.8 Da PI: 5.2475 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 53.1 | 4.5e-17 | 224 | 260 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp++Rrgp g++tLCnaCGl+++ kg+ Gorai.008G017800.2 224 CTHCGISSkkTPMMRRGPAGPRTLCNACGLKWANKGV 260 *****88888************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 14.763 | 84 | 119 | IPR010399 | Tify domain |
SMART | SM00979 | 3.4E-11 | 84 | 119 | IPR010399 | Tify domain |
Pfam | PF06200 | 1.9E-12 | 88 | 118 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 13.205 | 151 | 193 | IPR010402 | CCT domain |
Pfam | PF06203 | 6.0E-16 | 151 | 193 | IPR010402 | CCT domain |
SMART | SM00401 | 1.3E-11 | 218 | 271 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 7.13E-12 | 221 | 270 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.6E-15 | 223 | 265 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 4.1E-14 | 224 | 260 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 224 | 251 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 8.748 | 224 | 266 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 2.28E-15 | 224 | 273 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MANSNHQRTP MYGSGAANMQ RNIDEEEDDD VPGGAGGGGE ESVDNPQIGF QENGAVVAVM 60 NNGMDEASHA HVYGQGSDST SAPGNGGADQ LTLSFQGEVY VFDSVSPDKV QAVLLLLGGY 120 EIPSGIPAMG TVSVTQRGLS DFPGRSIQPQ RAASLNRFRE KRKERCFEKK IRYTVRKEVA 180 LRMQRKKGQF TSSKAISEEV ASASSGWSGT PGSGQDENIQ EVLCTHCGIS SKKTPMMRRG 240 PAGPRTLCNA CGLKWANKGV LRDLSKVSTV AIPDPTVKTA EQSDAEANES EAVTVTPDVV 300 SSSNGDNSTV TAER* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012436062.1 | 0.0 | PREDICTED: GATA transcription factor 24-like isoform X1 | ||||
Refseq | XP_012436063.1 | 0.0 | PREDICTED: GATA transcription factor 24-like isoform X1 | ||||
Swissprot | Q8H1G0 | 6e-78 | GAT28_ARATH; GATA transcription factor 28 | ||||
TrEMBL | A0A0D2PM93 | 0.0 | A0A0D2PM93_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G017800.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 8e-72 | ZIM-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G017800.2 |
Entrez Gene | 105762740 |
Publications ? help Back to Top | |||
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