PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G017200.2 | ||||||||
Common Name | B456_008G017200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 204aa MW: 22684.1 Da PI: 9.9691 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.1 | 4.1e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i n+ rqvtfskRr g++KKA+ELS+LCdae+a+i+fs tgkl+ yss Gorai.008G017200.2 9 KKIANTAARQVTFSKRRRGLFKKAHELSTLCDAEIALIVFSATGKLFKYSS 59 6899*********************************************96 PP | |||||||
2 | K-box | 30.1 | 2.1e-11 | 90 | 158 | 17 | 85 |
K-box 17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 + ++ L kei + +e+R+l GedL+ L+l +L+qLe+ ++ +l++i ++K l+e+ l+++ + Gorai.008G017200.2 90 ESATHSVLSKEIAEKTQELRQLRGEDLHGLNLDQLKQLEKLVQGGLSQISETKGAELKEENLILKQQVE 158 5556677888888888999**********************************9999998877777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.6E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.903 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.76E-29 | 2 | 70 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.88E-39 | 3 | 68 | No hit | No description |
Pfam | PF00319 | 4.6E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 8.65 | 87 | 170 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.7E-7 | 92 | 158 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MTRQRIEIKK IANTAARQVT FSKRRRGLFK KAHELSTLCD AEIALIVFSA TGKLFKYSST 60 SMRQVIERRR LQSERIDGLE GAPSVELQLE SATHSVLSKE IAEKTQELRQ LRGEDLHGLN 120 LDQLKQLEKL VQGGLSQISE TKGAELKEEN LILKQQVEKL PLVVKGQPSE PFPHLHKSGD 180 PPPPPQGYNT SDISLTLGLP FPS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-21 | 1 | 66 | 1 | 66 | MEF2C |
5f28_B | 4e-21 | 1 | 66 | 1 | 66 | MEF2C |
5f28_C | 4e-21 | 1 | 66 | 1 | 66 | MEF2C |
5f28_D | 4e-21 | 1 | 66 | 1 | 66 | MEF2C |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC155658 | 0.0 | KC155658.1 Gossypium hirsutum MADS box protein MADS63 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012436069.1 | 1e-141 | PREDICTED: MADS-box protein JOINTLESS-like isoform X3 | ||||
Refseq | XP_012436070.1 | 1e-141 | PREDICTED: MADS-box protein JOINTLESS-like isoform X3 | ||||
Refseq | XP_012436071.1 | 1e-141 | PREDICTED: MADS-box protein JOINTLESS-like isoform X3 | ||||
Refseq | XP_012436072.1 | 1e-141 | PREDICTED: MADS-box protein JOINTLESS-like isoform X3 | ||||
Swissprot | Q9FUY6 | 3e-60 | JOIN_SOLLC; MADS-box protein JOINTLESS | ||||
TrEMBL | A0A0D2ST24 | 1e-143 | A0A0D2ST24_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G017200.1 | 1e-141 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24540.1 | 2e-61 | AGAMOUS-like 24 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G017200.2 |
Publications ? help Back to Top | |||
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