PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G009500.1
Common NameB456_008G009500, LOC105762656
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 476aa    MW: 51093.5 Da    PI: 8.8351
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G009500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.12.3e-114975127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                        ++ + C +++rtG C yG+rC+++H++
  Gorai.008G009500.1 49 PGVPDCVYYMRTGLCGYGSRCRYNHPR 75
                        57899********************96 PP
2zf-CCCH40.16e-1394120127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++ C+f+++tGtCk+G++CkF+H++
  Gorai.008G009500.1  94 PGEPACQFYLKTGTCKFGASCKFHHPK 120
                         57899********************96 PP
3zf-CCCH38.42.1e-12140166127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++e+C++++++G+Ck+G +CkF+H++
  Gorai.008G009500.1 140 PGEEECSYYLKMGQCKFGVTCKFHHPQ 166
                         589**********************97 PP
4zf-CCCH361.2e-11297323127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C++++rtG Ck+G++C+++H++
  Gorai.008G009500.1 297 PGEPECQYYLRTGDCKFGSTCRYHHPR 323
                         5799*********************96 PP
5zf-CCCH36.57.9e-12344368226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         +  +C+f++++G+Ck+G++CkF H+
  Gorai.008G009500.1 344 GVQPCSFYLQNGHCKFGSTCKFDHP 368
                         6789********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.1E-64875IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9954876IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-85075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-65376IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-45475IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-793120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.01493121IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-1095120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-697120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-499120IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5139166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.756139167IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-10141166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5142167IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-5296323IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.46296324IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-9298323IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-6300325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4302323IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6342369IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.319342370IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-9344368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6344373IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5346368IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MELYGRNPGR NGSQSVHQPE WSPAGPGTGL EESMWQLSLR GPESYPERPG VPDCVYYMRT  60
GLCGYGSRCR YNHPRNRAAV EAAVRATGEY PERPGEPACQ FYLKTGTCKF GASCKFHHPK  120
HGGGSFSHVP LNIYGYPLRP GEEECSYYLK MGQCKFGVTC KFHHPQPAGT SMPVSAPQFY  180
QPVQSPSVPM PEQYGGASTS VRVARPPLLP GSYVQGAYGP VLFSPGVVPI PGWSHYSAPV  240
SPVLSPGAQP GVGATSLYGL TQLSSSTPSL AGPYPSLPSS TGPSSSNQKD QTFPERPGEP  300
ECQYYLRTGD CKFGSTCRYH HPRDRVVPRT NCILSPMGLP LRPGVQPCSF YLQNGHCKFG  360
STCKFDHPVG PMRYNPSASS FIDMPVAPYQ VGSLLATLAP SSSSSDLRPE LISSKKDSYL  420
SRIPSSASTS SSSVGLIFSQ TGSVPLSDLQ LSSQSSVPLS SSRSTRQGGE VRRTN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435923.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A0D2SSP50.0A0A0D2SSP5_GOSRA; Uncharacterized protein
STRINGGorai.008G009500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59122647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]