PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G008400.4
Common NameB456_008G008400
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family DBB
Protein Properties Length: 278aa    MW: 31159.9 Da    PI: 6.2739
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G008400.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.17.3e-081154239
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                        + r C+ +++ ++ l+C+ ++  lC +C  e H+       H++
  Gorai.008G008400.4 11 QGRLCDYCNQSKALLYCRADSAKLCFSCDREVHSAnqlfskHSR 54
                        6789******99*********************65777777776 PP
2zf-B_box30.48e-105499242
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.....Htvvpl 42
                        + + C+ ++  ++++fCe+ q+ +C +C  e+Hk      H+++p+
  Gorai.008G008400.4 54 RSQLCDACDGSPASIFCETEQSVFCSNCDWESHKFstsslHNRRPI 99
                        5689*****************************8899999998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.9E-141057IPR000315B-box-type zinc finger
PROSITE profilePS5011911.2061057IPR000315B-box-type zinc finger
PfamPF006431.6E-61155IPR000315B-box-type zinc finger
CDDcd000212.37E-61345No hitNo description
PROSITE profilePS5011910.5665399IPR000315B-box-type zinc finger
PfamPF006431.9E-75599IPR000315B-box-type zinc finger
CDDcd000211.78E-55799No hitNo description
SMARTSM003360.125899IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MTDQRRSNQK QGRLCDYCNQ SKALLYCRAD SAKLCFSCDR EVHSANQLFS KHSRSQLCDA  60
CDGSPASIFC ETEQSVFCSN CDWESHKFST SSLHNRRPIE GFTGCPSVNE LVSFVGIEDV  120
GEKKGGDDCG YDDGWLDLLS WENPVISSFD DLLVSSDSDH GFKPTDVLPL PKNRNANCGQ  180
HKEEVLHQLR ELAKSEPTLS FDNTDDLQTG TVHTSCTNDT APISFPAYEM LFWKRKQLQI  240
SHGYVAQLRG LFIGLRCHLG EVKLTIRSAK RHIVVWL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435903.11e-171PREDICTED: zinc finger protein CONSTANS-LIKE 13 isoform X1
RefseqXP_012435904.11e-171PREDICTED: zinc finger protein CONSTANS-LIKE 13 isoform X1
RefseqXP_012435905.11e-171PREDICTED: zinc finger protein CONSTANS-LIKE 13 isoform X1
RefseqXP_012435906.11e-171PREDICTED: zinc finger protein CONSTANS-LIKE 13 isoform X1
SwissprotO822562e-70COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A0D2PL150.0A0A0D2PL15_GOSRA; Uncharacterized protein
STRINGGorai.008G008400.11e-170(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.23e-67B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]