PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G008400.1
Common NameB456_008G008400, LOC105762648
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 353aa    MW: 39520.8 Da    PI: 6.3872
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G008400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.61.1e-071154239
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                        + r C+ +++ ++ l+C+ ++  lC +C  e H+       H++
  Gorai.008G008400.1 11 QGRLCDYCNQSKALLYCRADSAKLCFSCDREVHSAnqlfskHSR 54
                        6789******99*********************65777777776 PP
2zf-B_box29.91.1e-095499242
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.....Htvvpl 42
                        + + C+ ++  ++++fCe+ q+ +C +C  e+Hk      H+++p+
  Gorai.008G008400.1 54 RSQLCDACDGSPASIFCETEQSVFCSNCDWESHKFstsslHNRRPI 99
                        5689*****************************8899999998886 PP
3CCT652.1e-22308349142
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvk 42 
                         R+ a++RYkeKrktR+F+K+irYesRK++AesR R+KGrF+k
  Gorai.008G008400.1 308 RDSAISRYKEKRKTRRFDKHIRYESRKVRAESRARIKGRFAK 349
                         899**************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.9E-141057IPR000315B-box-type zinc finger
PROSITE profilePS5011911.2061057IPR000315B-box-type zinc finger
PfamPF006432.3E-61155IPR000315B-box-type zinc finger
CDDcd000211.45E-61357No hitNo description
PROSITE profilePS5011910.5665399IPR000315B-box-type zinc finger
PfamPF006432.7E-75599IPR000315B-box-type zinc finger
CDDcd000211.10E-55799No hitNo description
SMARTSM003360.125899IPR000315B-box-type zinc finger
PROSITE profilePS5101715.071308350IPR010402CCT domain
PfamPF062037.1E-17308349IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MTDQRRSNQK QGRLCDYCNQ SKALLYCRAD SAKLCFSCDR EVHSANQLFS KHSRSQLCDA  60
CDGSPASIFC ETEQSVFCSN CDWESHKFST SSLHNRRPIE GFTGCPSVNE LVSFVGIEDV  120
GEKKGGDDCG YDDGWLDLLS WENPVISSFD DLLVSSDSDH GFKPTDVLPL PKNRNANCGQ  180
HKEEVLHQLR ELAKSEPTLS FDNTDDLQTG TVHTSCTNDT APISFPAYES SALRFFGDNV  240
EMTDKVFVPF SELRGHTEEC AVVPDKHLGS SRTIPVSDSL GNQQHQIDAG TVSALPKVAV  300
HELNSQERDS AISRYKEKRK TRRFDKHIRY ESRKVRAESR ARIKGRFAKL EH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435903.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13 isoform X1
RefseqXP_012435904.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13 isoform X1
RefseqXP_012435905.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13 isoform X1
RefseqXP_012435906.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13 isoform X1
SwissprotO822561e-100COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A0D2R6160.0A0A0D2R616_GOSRA; Uncharacterized protein
STRINGGorai.008G008400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81482736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.14e-96B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]