PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G002200.1
Common NameB456_008G002200, LOC105762591
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 440aa    MW: 48243.3 Da    PI: 8.6569
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G002200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-0579101123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C+k F r  nL+ H r H
  Gorai.008G002200.1  79 FVCEICNKGFQRDQNLQLHRRGH 101
                         89*******************88 PP
2zf-C2H213.50.00021155177123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k +  +s+ k H +t+
  Gorai.008G002200.1 155 WKCEKCSKIYAVQSDWKAHTKTC 177
                         58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-578101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.18E-678101No hitNo description
PfamPF121716.8E-579101IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.94979101IPR007087Zinc finger, C2H2
SMARTSM003550.01779101IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SMARTSM00355260120150IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.4E-4143176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.18E-6150175No hitNo description
SMARTSM00355160155175IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MFPTAMSNST SLSEEASTTV SSCTRVVQDF CALIPIVSTI SPQQQPQNIK KKRSLPGNPD  60
PDAEVIALSP KTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR NNKEIKKRAY  120
VCPEPTCVHH HPSRALGDLT GIKKHYCRKH GEKKWKCEKC SKIYAVQSDW KAHTKTCGTR  180
EYRCDCGTLF SRKDSFITHR AFCDALAEES ARLSANQLAV AAATNPALHH LTSQANPTTN  240
PSSLFPFETH ISLNPWVDPT PTTNPNPNNP LHVKPESHHL APFFQEALPP QKTLITSPFQ  300
SLHVSNNAPS IAAAATSTSP HLSATALLQK AATVGATATQ INNNNNGMDF FGFASGNLAT  360
WQKSSDRFTR DFLGLTGDHH QPHGGGGGNG NVSVSMNVKD VLTYAGEVEL QQHFERDHSL  420
LKPQGFGFAE PASETWADC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-36151215367Zinc finger protein JACKDAW
5b3h_F2e-36151215367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435815.10.0PREDICTED: protein indeterminate-domain 12-like
SwissprotO227591e-126IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A0D2SS970.0A0A0D2SS97_GOSRA; Uncharacterized protein
STRINGGorai.008G002200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-120indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]