PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G378300.2 | ||||||||
Common Name | B456_007G378300, LOC105761854 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 257aa MW: 28857.3 Da PI: 9.4473 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.4 | 1.9e-14 | 79 | 123 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + k++G+g+W+ I+r + +Rt+ q+ s+ qky Gorai.007G378300.2 79 PWTEEEHRQFLMGLKKYGKGDWRNISRNFVMTRTPTQVASHAQKY 123 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.631 | 1 | 22 | IPR017884 | SANT domain |
PROSITE profile | PS51294 | 21.447 | 72 | 128 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.93E-17 | 74 | 127 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-17 | 75 | 127 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.8E-13 | 76 | 126 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-13 | 76 | 123 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-12 | 79 | 123 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.67E-12 | 79 | 124 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MVPGKTVEDV IKQYRELEED VSDIEAGLIP IPGYTTDSFR LEWVNDSQGF DGIRNYYTPG 60 GKRGSGSRPS DHERKKGVPW TEEEHRQFLM GLKKYGKGDW RNISRNFVMT RTPTQVASHA 120 QKYFIRQLTG GKDKKRTSIH DITTVNIPDT PSSSPDHSKP LSPNNSSAVI QSQQQSKVPS 180 VTTKELFDFE WKQHNEGVAA MVFNQTSTGN ALLSPLCGIS SYGTKLEEKQ LPRGTLPRSQ 240 FGSYNTLFQM QSMQHQ* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012435251.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 9e-93 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A0D2PKL4 | 0.0 | A0A0D2PKL4_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A0D2R5P7 | 0.0 | A0A0D2R5P7_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A0D2SX26 | 0.0 | A0A0D2SX26_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A2P5QH38 | 0.0 | A0A2P5QH38_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.007G378300.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 1e-85 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G378300.2 |
Entrez Gene | 105761854 |
Publications ? help Back to Top | |||
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