PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G376400.1
Common NameB456_007G376400, LOC105761833
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 635aa    MW: 72554.4 Da    PI: 6.6356
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G376400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3827.1e-1172606321374
                GRAS   1 lvelLlecAeavssgdle.laqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                         l++lL++cA+av++gd +   ++lL+++++++sp gd +qRla+y++eAL+arla+++s++yk+l +++ts     + ++a+ l++ ++P+
  Gorai.007G376400.1 260 LRTLLITCAQAVAAGDRNgTSSELLKQIRQHSSPFGDGNQRLAHYLAEALEARLAGTGSHIYKSLVSKRTS---AYDIMKAYLLYVAACPF 347
                         6789************9967789*******************************************99999...899************** PP

                GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179
                          k+sh+++N+ I  a  ++ r+H+iDf+i +G+QWp+L++ L+ Rpegpp+lRiTg++ p++g   +e++eetg+rLa +Aee++vpf+++
  Gorai.007G376400.1 348 RKVSHFICNKSINVASRKSMRLHVIDFGILYGFQWPTLIERLSLRPEGPPKLRITGIDFPQPGfkPAERVEETGRRLAAYAEEFKVPFQYK 438
                         **************************************************************999************************** PP

                GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                         + +ak++e+++leeL+++++E ++Vn+ ++ ++llde+v+++s+r+ vL+l+++++P+++++   +   n++ F++rf eal ++s++fd+
  Gorai.007G376400.1 439 A-IAKKWETVRLEELEIEEDEFVVVNCLYRAKNLLDETVAVHSPRNIVLNLIRKINPNLFIHGIINGAFNAPFFVTRFREALFHFSSMFDM 528
                         *.7**************************************************************************************** PP

                GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                         l+a +pre+ er+ +Ere+lgre+ n++ace  er+er et+++W++r+ +aGF + p++ +++k+a   +++++ + + v+e++ +lv+g
  Gorai.007G376400.1 529 LDAIVPREDWERMLIEREILGREALNAIACESWERVERPETVKQWHARILRAGFLQQPFQREIVKEAFERVQTFYHKDFVVDEDKLWLVQG 619
                         ***************************************************************************888************* PP

                GRAS 362 WkdrpLvsvSaWr 374
                         Wk+r ++++SaW+
  Gorai.007G376400.1 620 WKGRIIYALSAWK 632
                         ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.444234612IPR005202Transcription factor GRAS
PfamPF035142.4E-114260632IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MDPRFEGFSV FQKENFKEFH YHPSEPPASS LRHEEDLSED CDFSDSILRY INDILMEEDM  60
EDKSCMLQES LDLQAAEKSF YDVLGKKYPP SPEHNSRSFG DNNGDLLQNQ TQSPNVSSIS  120
QSSYSSSSMV SLDGMLESPN STLQVPESIW QFNKGVEEAS KFIPSNVDLF GNFESYSKGR  180
KFSNRDDVAD EDERTSKQVA VCSETSVRSE MLDMVLLCSS GKPPTRFTAL RDSLRDGIGR  240
KVQQKGRGKK QSGKKEVVDL RTLLITCAQA VAAGDRNGTS SELLKQIRQH SSPFGDGNQR  300
LAHYLAEALE ARLAGTGSHI YKSLVSKRTS AYDIMKAYLL YVAACPFRKV SHFICNKSIN  360
VASRKSMRLH VIDFGILYGF QWPTLIERLS LRPEGPPKLR ITGIDFPQPG FKPAERVEET  420
GRRLAAYAEE FKVPFQYKAI AKKWETVRLE ELEIEEDEFV VVNCLYRAKN LLDETVAVHS  480
PRNIVLNLIR KINPNLFIHG IINGAFNAPF FVTRFREALF HFSSMFDMLD AIVPREDWER  540
MLIEREILGR EALNAIACES WERVERPETV KQWHARILRA GFLQQPFQRE IVKEAFERVQ  600
TFYHKDFVVD EDKLWLVQGW KGRIIYALSA WKPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-452496338380Protein SCARECROW
5b3h_A2e-452496337379Protein SCARECROW
5b3h_D2e-452496337379Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5778781e-173JX577878.1 Gossypium hirsutum clone NBRI_GE9783 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435227.10.0PREDICTED: scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A0D2SRA10.0A0A0D2SRA1_GOSRA; Uncharacterized protein
STRINGGorai.007G376400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]