PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G373500.1

Common Name

B456_007G373500

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 516aa MW: 58538.2 Da PI: 8.0096

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G373500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.8	5.8e-09	352	399	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +lvd+++++G g+W+ I + + + Rt+ +++++w+++l Gorai.007G373500.1 352 WTLMEVIKLVDGIAKYGVGRWTNIKKLLFassTYRTPVDLRDKWRNLL 399 **********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.4E-12	344	403	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.824	344	403	IPR017930	Myb domain
SuperFamily	SSF46689	5.91E-15	346	409	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-9	348	401	IPR001005	SANT/Myb domain
CDD	cd11660	1.94E-16	350	400	No hit	No description
Pfam	PF00249	6.9E-7	351	399	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence Send to blast
METDRKSHSM KKLDDVKCQR VDQPVVPGLD DEVTEVEHLL AEPKIEHVSA DGILCFGNEN 60 IEKHLKMEDF SCAFDYGWKI SSGGLDSIHG RGGDDLKLEV LDGLLDEVDE VDDIDAAHDL 120 SGACEDFLLD IEFPEKLSEL DCGPREGSTL CNSSSESHSP GFSGRSNSVS GISESSIATV 180 RESNSENGGL GKRVGCNLRH NFRRKHGCQG PVMDVGRSSI EHVQDLDESD DDEKPLVSLI 240 LSNQKVKSSV KVTKGDTLLR QKRLRKPTRR YIEEFSRNST MEESKSHKIQ PQEEFPQVPS 300 ESQPRRGCPK KIVLKSELES DYELSASESE DGRKRTKRSK TACDRRKHQK MWTLMEVIKL 360 VDGIAKYGVG RWTNIKKLLF ASSTYRTPVD LRDKWRNLLR SSSVQENNRR ELNPNVHCRL 420 RIIRSMPYVP YQSPWYVASV NWQPFIHTRR FHLSIMFLRP NNRQLKALRF TTVHETYVGS 480 KRSLKKAFCV NSSLACNSPF NTDLHILMLF KSLGN*

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence Send to blast

METDRKSHSM KKLDDVKCQR VDQPVVPGLD DEVTEVEHLL AEPKIEHVSA DGILCFGNEN  60
IEKHLKMEDF SCAFDYGWKI SSGGLDSIHG RGGDDLKLEV LDGLLDEVDE VDDIDAAHDL  120
SGACEDFLLD IEFPEKLSEL DCGPREGSTL CNSSSESHSP GFSGRSNSVS GISESSIATV  180
RESNSENGGL GKRVGCNLRH NFRRKHGCQG PVMDVGRSSI EHVQDLDESD DDEKPLVSLI  240
LSNQKVKSSV KVTKGDTLLR QKRLRKPTRR YIEEFSRNST MEESKSHKIQ PQEEFPQVPS  300
ESQPRRGCPK KIVLKSELES DYELSASESE DGRKRTKRSK TACDRRKHQK MWTLMEVIKL  360
VDGIAKYGVG RWTNIKKLLF ASSTYRTPVD LRDKWRNLLR SSSVQENNRR ELNPNVHCRL  420
RIIRSMPYVP YQSPWYVASV NWQPFIHTRR FHLSIMFLRP NNRQLKALRF TTVHETYVGS  480
KRSLKKAFCV NSSLACNSPF NTDLHILMLF KSLGN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012435185.1	0.0	PREDICTED: uncharacterized protein LOC105761804
TrEMBL	A0A0D2SWV6	0.0	A0A0D2SWV6_GOSRA; Uncharacterized protein
STRING	Gorai.007G373500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9200	19	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	3e-21	TRF-like 6

Link Out ? help Back to Top
Phytozome	Gorai.007G373500.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]