PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G372000.2
Common NameB456_007G372000
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WOX
Protein Properties Length: 199aa    MW: 22490.1 Da    PI: 6.5174
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G372000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.86.8e-2285145257
                         T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                         r+R+t+t+ ql++Le+ +e+ + +ps+++++e+A++l    +++e++V++WFqNrRa+ k+
  Gorai.007G372000.2  85 RQRWTPTPLQLQILENIYEQgTGTPSKQKIKEIASELaqhgQISETNVYNWFQNRRARSKR 145
                         89*****************99**************************************97 PP
2Wus_type_Homeobox101.75.1e-3384146264
   Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                         +r+RWtPtp Q++iLe++y++G+ tP+k++i++i++eL+++G+i+++NV++WFQNr+aR+++k
  Gorai.007G372000.2  84 PRQRWTPTPLQLQILENIYEQGTGTPSKQKIKEIASELAQHGQISETNVYNWFQNRRARSKRK 146
                         689**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.81981146IPR001356Homeobox domain
SMARTSM003896.2E-1483150IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-1783150IPR009057Homeodomain-like
SuperFamilySSF466892.14E-1983149IPR009057Homeodomain-like
CDDcd000862.38E-1484146No hitNo description
PfamPF000461.2E-1985145IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MERENQHGEE EYLQYQIQNG VCGKVMSDEQ VEELKKQIVA YSAISEQLAE LHKSMSAHHD  60
FTGIRLGNLY CDPISASFGH KITPRQRWTP TPLQLQILEN IYEQGTGTPS KQKIKEIASE  120
LAQHGQISET NVYNWFQNRR ARSKRKFQIS TGSANAEPEP DVSTKEKKTK PVGLDFIDSF  180
SQGVESFYFQ GSESGTKM*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435168.11e-145PREDICTED: WUSCHEL-related homeobox 8-like
SwissprotQ5QMM32e-62WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLA0A0D2SQP81e-146A0A0D2SQP8_GOSRA; Uncharacterized protein
STRINGGorai.007G372000.11e-144(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.12e-61WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]