PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G371500.1
Common NameB456_007G371500, LOC105761781
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 482aa    MW: 52741.4 Da    PI: 7.0817
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G371500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix58.12.4e-18103189186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W++  + +L+ea+ e+ ++l+rg+l++ +Weev++++  r ++ ++s +qCk+k +nl+kryk ++++++++   + s++p+f+++e
  Gorai.007G371500.1 103 EWSDAAIGCLLEAYMEKLTQLNRGNLRGRDWEEVAAAVseRCEKQSKSVEQCKNKVDNLKKRYKLERHRMSDGG-ITASHWPWFKKME 189
                         5*************************************777778899*************************95.55569*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.2E-21101191No hitNo description
Gene3DG3DSA:3.40.1160.101.3E-69228474IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536332.49E-54241474IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B31.809241475IPR015963Uridylate kinase, bacteria
CDDcd042543.54E-117244475No hitNo description
PfamPF006961.9E-24245454IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MASSVDDEFS LIDDHETNPS HHHVLHHHHS YAQVHAPPPD NHNGDDDSDS AFRGANFVNN  60
NSSNATSSDV RIEKRRDQEE INDGVLKRSK QSAATEYRKD REEWSDAAIG CLLEAYMEKL  120
TQLNRGNLRG RDWEEVAAAV SERCEKQSKS VEQCKNKVDN LKKRYKLERH RMSDGGITAS  180
HWPWFKKMEE IVGNSLPAKA VVEEDKGSAS PGTVVRQSKS RYTSAAPNPV GQMITMKSKS  240
PKWRRVVFKI SGAALACTGP PNIDPKVAML IAREVAIACR LGVEVAIVVG GRNFFCGDTW  300
VAATGLDRST AYQIGMMASV MNSILLQSLL EKMGVQARVQ TAFSVQEAEP YSRVRAIRHL  360
EKGRVVIFGG IGAGTGNPLF STDTAAALRA SEIHAEAVVK GTNVDGVYDC HSQDNNATFE  420
HISFRDLVSR GATTMDMMSL TFCEENGIPV VVFNLLQPGN ISKALCGDQV GTLIDQTGRI  480
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A6e-5722747434279Uridylate kinase
3nwy_B6e-5722747434279Uridylate kinase
3nwy_C6e-5722747434279Uridylate kinase
3nwy_D6e-5722747434279Uridylate kinase
3nwy_E6e-5722747434279Uridylate kinase
3nwy_F6e-5722747434279Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3949731e-46GQ394973.1 Gossypium hirsutum cultivar Delta Opal clone MONCS1996 SSR marker DPL0376 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435155.10.0PREDICTED: uncharacterized protein LOC105761781 isoform X1
TrEMBLA0A0D2PKC80.0A0A0D2PKC8_GOSRA; Uncharacterized protein
STRINGGorai.007G371500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93052631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]