PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G371300.3

Common Name

B456_007G371300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 233aa MW: 24835.6 Da PI: 4.3673

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G371300.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	2.9e-05	205	228	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg+sF + L++H + H Gorai.007G371300.3 205 FPCKSCGRSFGSENALQSHSKAkH 228 89*****************88777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.54E-5	198	227	No hit	No description
PROSITE profile	PS50157	11.011	205	228	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0052	205	228	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	207	228	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MPLDLALHSK FELSHTWKNG SVYFTGYYVD TPQGSGSESE EELPEPIVNP VKPHATISDP 60 TTSKQVKIVE PKKAEDSSDD EDEDDTSTED EMSSEDQEPG MLVNGENESD NDTDSDEDDS 120 EEESSDEDPE TPETEKAGPS KKRSAESATK TPAPEKKAKL VTPQKTDGKK VGGHTATPHP 180 SKEARKASAT TGQVNQSAKP GGSSFPCKSC GRSFGSENAL QSHSKAKHGI AV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012435157.1	1e-166	PREDICTED: histone deacetylase HDT1-like isoform X1
TrEMBL	A0A0D2SQN2	1e-166	A0A0D2SQN2_GOSRA; Uncharacterized protein
STRING	Gorai.007G371300.1	1e-165	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03740.1	2e-15	histone deacetylase 2C

Link Out ? help Back to Top
Phytozome	Gorai.007G371300.3

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]