PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G361700.1

Common Name

B456_007G361700, LOC105761664

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 310aa MW: 33880.2 Da PI: 6.2684

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G361700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.7	1e-08	199	246	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L + +++++sLq Gorai.007G361700.1 199 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 246 8*************************9....888999999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.14E-15	193	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.83E-8	193	250	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.3E-15	195	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.519	195	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.3E-6	199	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-8	201	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MESNAGTLET RSNKTALERE EVAALESLQF TDEIHCLMSA PATDNASSFT ALLELPAPQA 60 VQLIHSPDSA KLIAAPAPNV EDFKGGFHFP SNGGLIERAA RFSVFAGEGN NKSDSPEATS 120 NISSANLQKA VKSEPAETDS SQPLISDPTV ENRGIKRKDR EKVKGQTKKS KTTVKESSDD 180 TEKLPYVHVR ARRGQATDSH SLAERARREK INARMKLLQE LVPGCNKISG TALVLDEIIN 240 HVQSLQRQVE FLSMRLAAVN PRVDFNFDSV FTAESGFFMD SNFSGMVMPM MWPEIQLSAT 300 CLGERRSLQ*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.1917	0.0	flower\|seedling\| flowering

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012434992.1	0.0	PREDICTED: transcription factor bHLH48-like
Swissprot	Q3EAI1	1e-85	BH060_ARATH; Transcription factor bHLH60
TrEMBL	A0A0D2SWA5	0.0	A0A0D2SWA5_GOSRA; Uncharacterized protein
STRING	Gorai.007G361700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2576	27	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	1e-95	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.007G361700.1
Entrez Gene	105761664

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]