PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G357900.1
Common NameB456_007G357900
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 559aa    MW: 61653.1 Da    PI: 4.2205
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G357900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.22.1e-08155206156
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         s y+GV+++  + r++A ++d s++g +k+ + g ++ +e Aa+a++ a++kl+ge
  Gorai.007G357900.1 155 SIYRGVSRY--TCRYEAFLWDNSDQG-QKS-RTGGYDDEESAARAYDIAALKLWGE 206
                         579***875..69********66655.344.55779999**************997 PP
2AP236.51.2e-11237282755
                 AP2   7 rwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         r+++  ++W A+I       k  k ++lg+f+t+eeAa+a++ a+ +l+g
  Gorai.007G357900.1 237 RRNSDFKKWQARIGKG----KEmKGIYLGTFDTEEEAARAYDVAAIRLKG 282
                         66777799****9883....347************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-12155215IPR016177DNA-binding domain
CDDcd000182.58E-14155215No hitNo description
SMARTSM003803.5E-13156219IPR001471AP2/ERF domain
PROSITE profilePS5103213.235156213IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-11156214IPR001471AP2/ERF domain
PROSITE profilePS5103215.145231290IPR001471AP2/ERF domain
PfamPF008479.0E-7237282IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-13240290IPR016177DNA-binding domain
SMARTSM003801.1E-15241296IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-15242290IPR001471AP2/ERF domain
CDDcd000182.41E-18244291No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MISPNFDENM DFPLSPIPFP WSPQLVPSLE DVNIAPIDNG GLDNLCLQNN GVSPNMSQPN  60
YGPNGEGNSF GNQIPDPTSV VQNPAELPYN VMQEMMDSLI PLEANGEGET SKEKSKRKPR  120
NTSKKQEQGA EDARSNCKRK RQARQEPRTF GETSSIYRGV SRYTCRYEAF LWDNSDQGQK  180
SRTGGYDDEE SAARAYDIAA LKLWGEAAPL NFPISNYEKE LEEMKSYSKS EYLHYLRRNS  240
DFKKWQARIG KGKEMKGIYL GTFDTEEEAA RAYDVAAIRL KGANAITNFD IFEYDLMNIL  300
QSSKLPIGKG ASKLLMKSSM EDVIRKKKNL IGKTSFACFE DDDGSANPEI AQGFNSFGND  360
MNIDFNGIQA MEPVGFPMDL SGMDNNSQHQ TSSFFPVING CQNPVEFQGN SSGIFNGGIS  420
FPGNGDVETD DFQTNFDNFQ SLLGLEGQDC FNMNQIEDVV ANQDPNNFQT NPIPVNPSSG  480
CYNGDVSWNG VLQGVPSSLE IENNANGGCH GSDKFSDNGA AMVENPVQEN GVNLCEDSEM  540
DNLSRCFELL NELGPLCL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6002751e-34JX600275.1 Gossypium hirsutum clone NBRI_GE38041 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012434944.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0D2TS660.0A0A0D2TS66_GOSRA; Uncharacterized protein
STRINGGorai.007G357900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2439834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.15e-60AP2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]