PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G352600.5 | ||||||||
Common Name | B456_007G352600, LOC105761575 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 463aa MW: 50892.9 Da PI: 8.9419 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30.3 | 9.2e-10 | 176 | 217 | 4 | 45 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L Gorai.007G352600.5 176 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 217 6889*************************9777777666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 7.4E-9 | 167 | 220 | No hit | No description |
SMART | SM00338 | 1.2E-9 | 173 | 236 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.415 | 175 | 219 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 3.26E-22 | 177 | 229 | No hit | No description |
SuperFamily | SSF57959 | 6.88E-7 | 177 | 220 | No hit | No description |
Pfam | PF00170 | 7.7E-7 | 177 | 217 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 180 | 195 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 5.0E-32 | 259 | 335 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MGSRTLKNGV ENNKKDLSAM PSYVPSVPTS TSSGAEANAI RSSQLPDFGN LDQFRIEDAI 60 DLTRNPLFNQ IKSSSQALAD AQFGALSKTL ASADNNLSAA VVGSQTLPLQ KDNQPNLPHI 120 SVGRENWGDS NMADGSPRTD TSTDDTEEKN QRFGRGQTNA IVASDSSDRS KDKTDQKTLR 180 RLAQNREAAR KSRLRKKAYV QQLESSRLKL TQLEQELQRA RQQGIFISST GDQSHSMSGN 240 GALAFDVEYS RWLEEHNKHI NELRAAVNSH AGDAELRTIV DSVTAHFDDI FRLKGIAAKA 300 DVFHILSGMW KTPAERCFLW IGGFRSSELL KLLASQLEPL TEQQFMGIQN LQQSSQQAED 360 ALSQGMEALQ QSLAETLANG SPAPSGPSGN VANYMGQMAM AMGKLGTLEG FLRQADNLRQ 420 QTLQQMHRIL TTRQSARALL AINDYFSRLR ALSSLWLARP RE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.853 | 0.0 | seedling |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 48747402 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012434880.1 | 0.0 | PREDICTED: transcription factor HBP-1b(c38)-like | ||||
Swissprot | O24160 | 0.0 | TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1 | ||||
TrEMBL | A0A0D2TRW4 | 0.0 | A0A0D2TRW4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G352600.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12250.2 | 1e-147 | TGACG motif-binding factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G352600.5 |
Entrez Gene | 105761575 |
Publications ? help Back to Top | |||
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