PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G351500.2

Common Name

B456_007G351500

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 271aa MW: 29456.4 Da PI: 9.3104

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G351500.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97	1.4e-30	85	138	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Gorai.007G351500.2 85 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 138 59*****************.******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.33E-20	82	142	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.059	82	141	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.6E-31	84	143	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-24	86	138	IPR006447	Myb domain, plants
Pfam	PF00249	9.7E-8	88	137	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MREIEDSSNL FGKWEEELPS PEELMPLSQT LITPHLALAF DISNPNHRQR KHPPPPPPPP 60 AEFAGDSGDL GSGAGGDEPA RTLKRPRLVW TPQLHKRFVD AVAHLGIKNA VPKTIMQLMS 120 VDGLTRENVA SHLQKYRLYL KRMQGSGGGG ANGGAASDPA TDHLFASSPV PPHFLHPSKG 180 SSEPFAPFVS VPGLQHHHYQ QQQHQLAAAA AVGHPHLLTQ YQKQIGHFGS SPNGQLEHPF 240 LAKQPPPSIR RMGGSLMHGY LGNQLMFTYI *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	8e-32	85	141	1	57	Transcription factor LUX
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, leaves, stems, petioles, filaments, stigma, pedicels, sepals, anthers, petals, and siliques. {ECO:0000269\|PubMed:20331973}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269\|PubMed:20331973}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269\|PubMed:20331973}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012434867.1	1e-141	PREDICTED: transcription factor PCL1-like isoform X2
Swissprot	O22210	5e-64	MYBC1_ARATH; Transcription factor MYBC1
TrEMBL	A0A0D2TRT7	0.0	A0A0D2TRT7_GOSRA; Uncharacterized protein
STRING	Gorai.007G351500.1	1e-140	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10760.1	3e-60	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.007G351500.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Sardesai N,Laluk K,Mengiste T,Gelvin S The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium. Plant Signal Behav, 2018. [PMID:24785741]