PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G346200.1 | ||||||||
Common Name | B456_007G346200, LOC105761491 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 253aa MW: 27601.1 Da PI: 7.6246 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.6 | 1.2e-39 | 42 | 143 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C aCk+lrrkC+++C++ap+f ++q ++kfa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l Gorai.007G346200.1 42 PCGACKFLRRKCVSGCIFAPHFGSDQgAAKFAAVHKVFGASNVSKLLLHIPMNRRHDAVVTISYEAQARLSDPVYGCVSTILSLQQQVASL 132 7***********************9989*************************************************************** PP DUF260 91 kaelallkeel 101 +ael++++++l Gorai.007G346200.1 133 QAELVMVQNQL 143 *******9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.121 | 41 | 143 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.9E-39 | 42 | 140 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:1900150 | Biological Process | regulation of defense response to fungus |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MADPQCHGLS ETCRKGAGKR TTMPVEAKPV VASEVAPIPT APCGACKFLR RKCVSGCIFA 60 PHFGSDQGAA KFAAVHKVFG ASNVSKLLLH IPMNRRHDAV VTISYEAQAR LSDPVYGCVS 120 TILSLQQQVA SLQAELVMVQ NQLINSRFAM ANALQSSQQQ QHHHQHHHQQ QQQQHLALLQ 180 PAYSNNSSAS NNLINISNFA SNFDLVAETT TAPNSSQSMD HLQLSRPCHD DEDDEQDSRI 240 PPVFVNPIIH RT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-37 | 32 | 149 | 1 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-37 | 32 | 149 | 1 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012434765.1 | 0.0 | PREDICTED: LOB domain-containing protein 20 | ||||
Swissprot | Q9SRV3 | 9e-75 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | A0A0D2TRJ6 | 0.0 | A0A0D2TRJ6_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G346200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 1e-63 | LOB domain-containing protein 20 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G346200.1 |
Entrez Gene | 105761491 |
Publications ? help Back to Top | |||
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