PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G342200.6

Common Name

B456_007G342200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 1141aa MW: 126875 Da PI: 9.4019

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G342200.6	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.5	7.5e-09	44	79	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++ E e++++a +++G++ Wk++a+ + +R+++++ Gorai.007G342200.6 44 QWSKAEIEQFYKAYREHGKD-WKKVAAAVH-NRSAEMV 79 6***************99.*****.*9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	1.3E-4	41	89	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.57E-9	41	87	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-5	44	80	IPR009057	Homeodomain-like
Pfam	PF00249	7.0E-8	44	79	IPR001005	SANT/Myb domain
CDD	cd00167	4.97E-6	45	79	No hit	No description
Pfam	PF06584	9.2E-31	629	729	IPR033471	DIRP domain
SMART	SM01135	2.1E-50	629	730	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1141 aa Download sequence Send to blast
MAPTRKSKSV NKQYSSVYEV SPDKNAGNSR KSKAKKLTDK LGTQWSKAEI EQFYKAYREH 60 GKDWKKVAAA VHNRSAEMVE ALYSMNRAYL SLPDGTASVI GLIAMMTDHY NVLGVSDGER 120 ESNKPSDMSE KVQKRKRAKV HLESSKEDVV QPRSIASSEG CLSLLKRAGL NGILPHACRK 180 RTPRVPVSYS YRRDDTESFV PPIKRIKKSE VDDKDDEHVA ALTLTGTLQK GGSPCASRSP 240 YKITERRRSS PVRSYYRMLP QSETSKAELH DSSYECWMEG GPGGIELASG TYARDRGPLM 300 DMDGIGTVEV HRKGKNFYRK KIKVEESKNN LSDDGGEACS GTEGIVGNAL KGKVDMEISS 360 AKKKLSSCTE RKRTKKHVLG DQSCALDALL ALANLSSVVP TSITESESSV KLKEDRTTFE 420 VDDQSSVPEA ASITHHRDKI KQPRPNKKVL NLLNGAEDDS SRKSTVSEPK QQQEPSNNSR 480 KRKQKPYVSK ISSSEAPMDS RLRKHFDNEE MAKEEKKYLT KSKCASQQTS FRVPEGSVTN 540 NDPKMAGIDS VVSTSQVPAS DPVSLPTKHQ SRRKMNLKRA LLSTHKNSSV CTLKNQPNNH 600 SVPPDTPKEM LSSCLSSNLA RRWCCFEWFY SAIDYAWFAK REFVEYLNHV SLDHIPRLTR 660 VEWGVIRSSL GKPRRLSEHF LLEEREKLKQ YRESVRQHYT QLRVGTREGL ATDLAPPLCV 720 GQRVIAIHPK TREVHDGKVL TVDHDRCRVQ FDSPDLGVEF VMDIDCMPLN PLENMPETLK 780 KQNLAFNQFS LAPRGSQGNR HLELGGPEVF TSCGCVENAT SPVNINPIKV DAKRTLLHGK 840 PALPHVVSAH QAAYDQPLRI AHIQGREADI RAMSELSHAL DKKEALLSEL RNTNDIIENQ 900 NGESCLKVSE HFKKHITTAS SALLNLRQRN TYPANPLLPW QKHPTNLDFL GGLTSCSFDS 960 SLISPEAGCV VGDIINGSTL KARAMVDAAI KALSSMKEGE DVFKRIGEAL NIVDKKQITS 1020 DISMPAIKSP EQNQVNGSLS ITSKPMATTG WAPNPKLQEA SNKNEEQVPL ELITSCVSTL 1080 LMIQRCTERQ FPPADVAQII DSAITSLHPC CPQNLPIYRE IQMCMGKIKT QILALIPTLI 1140 *

Sequence ? help Back to Top

Protein Sequence Length: 1141 aa Download sequence Send to blast

MAPTRKSKSV NKQYSSVYEV SPDKNAGNSR KSKAKKLTDK LGTQWSKAEI EQFYKAYREH  60
GKDWKKVAAA VHNRSAEMVE ALYSMNRAYL SLPDGTASVI GLIAMMTDHY NVLGVSDGER  120
ESNKPSDMSE KVQKRKRAKV HLESSKEDVV QPRSIASSEG CLSLLKRAGL NGILPHACRK  180
RTPRVPVSYS YRRDDTESFV PPIKRIKKSE VDDKDDEHVA ALTLTGTLQK GGSPCASRSP  240
YKITERRRSS PVRSYYRMLP QSETSKAELH DSSYECWMEG GPGGIELASG TYARDRGPLM  300
DMDGIGTVEV HRKGKNFYRK KIKVEESKNN LSDDGGEACS GTEGIVGNAL KGKVDMEISS  360
AKKKLSSCTE RKRTKKHVLG DQSCALDALL ALANLSSVVP TSITESESSV KLKEDRTTFE  420
VDDQSSVPEA ASITHHRDKI KQPRPNKKVL NLLNGAEDDS SRKSTVSEPK QQQEPSNNSR  480
KRKQKPYVSK ISSSEAPMDS RLRKHFDNEE MAKEEKKYLT KSKCASQQTS FRVPEGSVTN  540
NDPKMAGIDS VVSTSQVPAS DPVSLPTKHQ SRRKMNLKRA LLSTHKNSSV CTLKNQPNNH  600
SVPPDTPKEM LSSCLSSNLA RRWCCFEWFY SAIDYAWFAK REFVEYLNHV SLDHIPRLTR  660
VEWGVIRSSL GKPRRLSEHF LLEEREKLKQ YRESVRQHYT QLRVGTREGL ATDLAPPLCV  720
GQRVIAIHPK TREVHDGKVL TVDHDRCRVQ FDSPDLGVEF VMDIDCMPLN PLENMPETLK  780
KQNLAFNQFS LAPRGSQGNR HLELGGPEVF TSCGCVENAT SPVNINPIKV DAKRTLLHGK  840
PALPHVVSAH QAAYDQPLRI AHIQGREADI RAMSELSHAL DKKEALLSEL RNTNDIIENQ  900
NGESCLKVSE HFKKHITTAS SALLNLRQRN TYPANPLLPW QKHPTNLDFL GGLTSCSFDS  960
SLISPEAGCV VGDIINGSTL KARAMVDAAI KALSSMKEGE DVFKRIGEAL NIVDKKQITS  1020
DISMPAIKSP EQNQVNGSLS ITSKPMATTG WAPNPKLQEA SNKNEEQVPL ELITSCVSTL  1080
LMIQRCTERQ FPPADVAQII DSAITSLHPC CPQNLPIYRE IQMCMGKIKT QILALIPTLI  1140
*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	478	483	SRKRKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ908228	9e-65	DQ908228.1 Gossypium hirsutum clone LIB5327-014-A1-N1-B10_Gh288 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012434695.1	0.0	PREDICTED: protein ALWAYS EARLY 2-like isoform X3
TrEMBL	A0A0D2SPD4	0.0	A0A0D2SPD4_GOSRA; Uncharacterized protein
STRING	Gorai.007G342200.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Gorai.007G342200.6

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]