PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G342200.2 | ||||||||
Common Name | B456_007G342200, LOC105761438 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 1152aa MW: 128029 Da PI: 9.4002 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.4 | 7.6e-09 | 44 | 79 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++ E e++++a +++G++ Wk++a+ + +R+++++ Gorai.007G342200.2 44 QWSKAEIEQFYKAYREHGKD-WKKVAAAVH-NRSAEMV 79 6*****************99.*********.***9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.3E-4 | 41 | 89 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.65E-9 | 41 | 87 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-5 | 44 | 80 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.0E-8 | 44 | 79 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.89E-6 | 45 | 79 | No hit | No description |
SMART | SM01135 | 2.1E-50 | 629 | 730 | IPR033471 | DIRP domain |
Pfam | PF06584 | 9.3E-31 | 629 | 729 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1152 aa Download sequence Send to blast |
MAPTRKSKSV NKQYSSVYEV SPDKNAGNSR KSKAKKLTDK LGTQWSKAEI EQFYKAYREH 60 GKDWKKVAAA VHNRSAEMVE ALYSMNRAYL SLPDGTASVI GLIAMMTDHY NVLGVSDGER 120 ESNKPSDMSE KVQKRKRAKV HLESSKEDVV QPRSIASSEG CLSLLKRAGL NGILPHACRK 180 RTPRVPVSYS YRRDDTESFV PPIKRIKKSE VDDKDDEHVA ALTLTGTLQK GGSPCASRSP 240 YKITERRRSS PVRSYYRMLP QSETSKAELH DSSYECWMEG GPGGIELASG TYARDRGPLM 300 DMDGIGTVEV HRKGKNFYRK KIKVEESKNN LSDDGGEACS GTEGIVGNAL KGKVDMEISS 360 AKKKLSSCTE RKRTKKHVLG DQSCALDALL ALANLSSVVP TSITESESSV KLKEDRTTFE 420 VDDQSSVPEA ASITHHRDKI KQPRPNKKVL NLLNGAEDDS SRKSTVSEPK QQQEPSNNSR 480 KRKQKPYVSK ISSSEAPMDS RLRKHFDNEE MAKEEKKYLT KSKCASQQTS FRVPEGSVTN 540 NDPKMAGIDS VVSTSQVPAS DPVSLPTKHQ SRRKMNLKRA LLSTHKNSSV CTLKNQPNNH 600 SVPPDTPKEM LSSCLSSNLA RRWCCFEWFY SAIDYAWFAK REFVEYLNHV SLDHIPRLTR 660 VEWGVIRSSL GKPRRLSEHF LLEEREKLKQ YRESVRQHYT QLRVGTREGL ATDLAPPLCV 720 GQRVIAIHPK TREVHDGKVL TVDHDRCRVQ FDSPDLGVEF VMDIDCMPLN PLENMPETLK 780 KQNLAFNQFS LAPRGSQGNR HLELGGPEVF TSCGCVENAT SPVNINPIKV DAKRTLLHGK 840 PALPHVVSAH QAAYDQPLRI AHIQGREADI RAMSELSHAL DKKEALLSEL RNTNDIIENQ 900 NGESCLKVSE HFKKHITTVL VQLKEASGQA SSALLNLRQR NTYPANPLLP WQKHPTNLDF 960 LGGLTSCSFD SSLISPEAGC VVGDIINGST LKARAMVDAA IKALSSMKEG EDVFKRIGEA 1020 LNIVDKKQIT SDISMPAIKS PEQNQVNGSL SITSKPMATT GWAPNPKLQE ASNKNEEQVP 1080 LELITSCVST LLMIQRCTER QFPPADVAQI IDSAITSLHP CCPQNLPIYR EIQMCMGKIK 1140 TQILALIPTL I* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 478 | 483 | SRKRKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ908228 | 9e-65 | DQ908228.1 Gossypium hirsutum clone LIB5327-014-A1-N1-B10_Gh288 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012434694.1 | 0.0 | PREDICTED: protein ALWAYS EARLY 2-like isoform X2 | ||||
TrEMBL | A0A0D2TR44 | 0.0 | A0A0D2TR44_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G342200.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 0.0 | DNA binding |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G342200.2 |
Entrez Gene | 105761438 |
Publications ? help Back to Top | |||
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