PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G336800.1

Common Name

B456_007G336800, LOC105761396

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YC

Protein Properties

Length: 271aa MW: 30081.8 Da PI: 6.1679

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G336800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	174.4	1.2e-54	85	189	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 ql++fw++q ie+a+dfknh+lPlarikki+kadedv+misaeaPv+++kace+f+leltlrsw+h+eenkrrtl+k+diaaa++rtd+ Gorai.007G336800.1 85 QLQMFWANQmqeIEHASDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEIFVLELTLRSWIHTEENKRRTLQKNDIAAAISRTDV 175 89****9778899************************************************************************ PP NF-YC 89 fdflvdivprdelk 102 fdflvdi+prdelk Gorai.007G336800.1 176 FDFLVDIIPRDELK 189 *********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	7.9E-34	63	179	IPR009072	Histone-fold
Pfam	PF00808	8.8E-21	107	170	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	4.9E-37	108	185	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MDRSEQTEQQ QQQQQPVMGV VAGTGPMGYS TGPYQAAPVA ASGTPATAVP SPTQPQATFS 60 GSPHQLAYQQ AQQFHHQQQQ QQHQQLQMFW ANQMQEIEHA SDFKNHSLPL ARIKKIMKAD 120 EDVRMISAEA PVIFAKACEI FVLELTLRSW IHTEENKRRT LQKNDIAAAI SRTDVFDFLV 180 DIIPRDELKE EGLGVTKATI PFVGSPTDMP YYYVPQHPVG HAGMTMGKPV DQAALYPGQQ 240 PRPPVAFVPW PHGQPQPPQP QQSEQQQSDS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-56	93	185	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	157	163	RRTLQKN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012434649.1	0.0	PREDICTED: nuclear transcription factor Y subunit C-2-like
Refseq	XP_012434650.1	0.0	PREDICTED: nuclear transcription factor Y subunit C-2-like
TrEMBL	A0A0D2PIP2	0.0	A0A0D2PIP2_GOSRA; Uncharacterized protein
STRING	Gorai.007G336800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM478	28	160

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	3e-81	nuclear factor Y, subunit C2

Link Out ? help Back to Top
Phytozome	Gorai.007G336800.1
Entrez Gene	105761396

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]