PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G332400.4

Common Name

B456_007G332400, LOC105761350

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

STAT

Protein Properties

Length: 505aa MW: 55926 Da PI: 5.1036

Description

STAT family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G332400.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	STAT	180	3.3e-56	222	343	1	122
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipk 91 ldv+lln++gqpv+k++evvasLlya + l+vek++d+e+pLL+s+dG+ef+s drp+kl +Grasfklkis+Lsskcdnr f+ikf + k Gorai.007G332400.4 222 LDVLLLNTFGQPVNKELEVVASLLYAHNWLPVEKTNDEEPPLLASCDGIEFASCDRPCKLSKGRASFKLKISKLSSKCDNRQFCIKFGVSK 312 89*************************************************************************************** PP STAT 92 lkkypfleavskpirCisrsrntrsssltkk 122 l+ y+fle +s +irCisr+r+ r+s+ ++k Gorai.007G332400.4 313 LEGYRFLEDFSPSIRCISRNRTPRTSTIVWK 343 ***********************999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.60.120.200	2.1E-6	5	177	IPR013320	Concanavalin A-like lectin/glucanase domain
Pfam	PF13385	8.7E-7	9	177	No hit	No description
SuperFamily	SSF49899	9.77E-7	9	171	IPR013320	Concanavalin A-like lectin/glucanase domain

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence Send to blast
MGENNQIIGE DDYILLKDFK VETEVDEEKG FILCFWVYIF NSNAFPSTIL KQVYAETNSS 60 PPLLVLDEKT LMIFPLTCLL NEALGSGNTD LPSEVPKVSA EIEHPQNNWI HVGYEVSSDF 120 VRLYINGEIA GELHLSSLSN DNSMPNGSRK RTLIGITGDS NLQGFIHDAK VLLSTLSIKE 180 QYVKDPPLRL SIDESSISDI EEDNGFWNIV GGKASCRRIF SLDVLLLNTF GQPVNKELEV 240 VASLLYAHNW LPVEKTNDEE PPLLASCDGI EFASCDRPCK LSKGRASFKL KISKLSSKCD 300 NRQFCIKFGV SKLEGYRFLE DFSPSIRCIS RNRTPRTSTI VWKKISAVHP VNGSQPFGLD 360 DSSCEPKHNI VHEAKLSPTS KRVRLGEAKI SAVDQHSEEC NSLASKQNQV ENGFGSRLEA 420 RPENFEEMNT SLSDSESTGA RDSALKSVSS RGHSVPDVTI FRYCLGGLTD RSLLLKEIAT 480 TVSDEEISGF AEQVSLYSGC SHHR*

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence Send to blast

MGENNQIIGE DDYILLKDFK VETEVDEEKG FILCFWVYIF NSNAFPSTIL KQVYAETNSS  60
PPLLVLDEKT LMIFPLTCLL NEALGSGNTD LPSEVPKVSA EIEHPQNNWI HVGYEVSSDF  120
VRLYINGEIA GELHLSSLSN DNSMPNGSRK RTLIGITGDS NLQGFIHDAK VLLSTLSIKE  180
QYVKDPPLRL SIDESSISDI EEDNGFWNIV GGKASCRRIF SLDVLLLNTF GQPVNKELEV  240
VASLLYAHNW LPVEKTNDEE PPLLASCDGI EFASCDRPCK LSKGRASFKL KISKLSSKCD  300
NRQFCIKFGV SKLEGYRFLE DFSPSIRCIS RNRTPRTSTI VWKKISAVHP VNGSQPFGLD  360
DSSCEPKHNI VHEAKLSPTS KRVRLGEAKI SAVDQHSEEC NSLASKQNQV ENGFGSRLEA  420
RPENFEEMNT SLSDSESTGA RDSALKSVSS RGHSVPDVTI FRYCLGGLTD RSLLLKEIAT  480
TVSDEEISGF AEQVSLYSGC SHHR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012434594.1	0.0	PREDICTED: uncharacterized protein LOC105761350 isoform X2
TrEMBL	A0A0D2R3E9	0.0	A0A0D2R3E9_GOSRA; Uncharacterized protein
TrEMBL	A0A0D2TQR1	0.0	A0A0D2TQR1_GOSRA; Uncharacterized protein
STRING	Gorai.007G332400.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78540.1	1e-112	SH2 domain protein B

Link Out ? help Back to Top
Phytozome	Gorai.007G332400.4
Entrez Gene	105761350

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]